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Dot annotation to segmentation mask #19

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tand826 opened this issue Oct 16, 2020 · 1 comment
Open

Dot annotation to segmentation mask #19

tand826 opened this issue Oct 16, 2020 · 1 comment

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@tand826
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tand826 commented Oct 16, 2020

current

  • Dot annotation does not give precise information for segmentation tasks because the precise contour information can not be single coordination.

add

  • Add function to guess the contour from a dot annotation. It might be a light-weighted NN or watershed-based method?
@bnapora
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bnapora commented Oct 19, 2020

Watershed-based methods have had some success, primary challenge is over-segementation. Use of a the dot annotation to define precise location to identify ROI should help with that.

Implementation could use a configurable square padding around the dot eg (90px x 90px) to identify the area the watershed function should be applied.

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