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v2.2

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@visze visze released this 16 Jul 07:52
· 112 commits to master since this release
v2.2
4a17ddf

No workflow changes. Only a few fixes and some restructuring of configs. Using nextflow version 20.01 now!

global changes

  • nextflow version 20.01 is needed because of multiMap() function
  • introducing new config file conf/global.config with global variables like the min. required nextflow version and the actual MPRAflow version.
  • moving cluster config to a sepArate file: conf/cluster.config. Try to adapt the times to the sort and longtime labels. Modify SLURM queue to SLUM not SGE options.
  • improved documentation

saturationMutagenesis.nf

  • Bugfix of default out dir. It was not set to params.outdir = "outs" so it tries to create a folder null. Now in params.outdir
  • removing default params.version and params.nf_required_version. Now in conf/global.config
  • Catching cases when barcode/p-value filtering produces 0 variants
  • Change update depricated fork method. Now works with nextflow 20.01

count.nf

  • removing default params.version, params.nf_required_version and params.outdir. Now in conf/global.config.

association.nf

  • removing default params.version, params.nf_required_version and params.outdir. Now in conf/global.config.
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