From 892cca75772ecdba0fc46e1492059a301f7e41d3 Mon Sep 17 00:00:00 2001
From: Joseph Kleinhenz <kleinhej@gene.com>
Date: Wed, 13 Nov 2024 22:20:14 +0000
Subject: [PATCH 1/3] add pypi workflow for pushing tags

---
 .github/workflows/tag.yml | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)
 create mode 100644 .github/workflows/tag.yml

diff --git a/.github/workflows/tag.yml b/.github/workflows/tag.yml
new file mode 100644
index 0000000..dabb08c
--- /dev/null
+++ b/.github/workflows/tag.yml
@@ -0,0 +1,28 @@
+name: tag
+on:
+  push:
+    tags:
+      - 'v[0-9]+.[0-9]+.[0-9]+'
+
+jobs:
+  pypi:
+    environment:
+      name: "test.pypi.org"
+      url: "https://test.pypi.org/project/lbster"
+    needs:
+      - "build"
+    permissions:
+      id-token: "write"
+    runs-on: "ubuntu-latest"
+    steps:
+      - uses: "actions/download-artifact@v4"
+        with:
+          name: "python-package-distributions"
+          path: "dist/"
+      - uses: "pypa/gh-action-pypi-publish@release/v1"
+        with:
+          user: __token__
+          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
+          repository-url: "https://test.pypi.org/legacy/"
+          skip-existing: true
+          verbose: true

From 5265e5d846f753ef5f7ce0b97a0060542616ec62 Mon Sep 17 00:00:00 2001
From: Joseph Kleinhenz <kleinhej@gene.com>
Date: Wed, 13 Nov 2024 22:20:57 +0000
Subject: [PATCH 2/3] move on to top of file

---
 .github/workflows/push.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/push.yml b/.github/workflows/push.yml
index 006d627..bd53d4e 100644
--- a/.github/workflows/push.yml
+++ b/.github/workflows/push.yml
@@ -1,3 +1,5 @@
+on: "push"
+
 jobs:
   build:
     runs-on: "ubuntu-latest"
@@ -103,4 +105,3 @@ jobs:
           repository-url: "https://test.pypi.org/legacy/"
           skip-existing: true
           verbose: true
-on: "push"

From 7efaf8da63f40a8ae8049115545dcbe08f2ffa87 Mon Sep 17 00:00:00 2001
From: Joseph Kleinhenz <kleinhej@gene.com>
Date: Wed, 13 Nov 2024 22:45:34 +0000
Subject: [PATCH 3/3] skip download of esmfold weights in ci

---
 tests/lobster/model/test__lobsterfold.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tests/lobster/model/test__lobsterfold.py b/tests/lobster/model/test__lobsterfold.py
index 6989b85..4ae4062 100644
--- a/tests/lobster/model/test__lobsterfold.py
+++ b/tests/lobster/model/test__lobsterfold.py
@@ -28,6 +28,8 @@ def structure_featurizer(scope="session"):
 
 @pytest.fixture
 def model(max_length, scope="session"):
+    if os.getenv("CI"):
+        pytest.skip("large download")
     return LobsterPLMFold(model_name="esmfold_v1", max_length=max_length)