From 745949a61333da4bfbb649ff33c75841934c2ffc Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Wed, 4 Sep 2024 01:54:01 -0400 Subject: [PATCH] pycurl added in CI and fixed regex for O24 and O25 --- .github/workflows/github-actions.yaml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.github/workflows/github-actions.yaml b/.github/workflows/github-actions.yaml index e86921d..da36b08 100644 --- a/.github/workflows/github-actions.yaml +++ b/.github/workflows/github-actions.yaml @@ -27,10 +27,11 @@ jobs: run: | sudo apt-get update sudo apt-get install mash ncbi-blast+ libssl-dev libcurl4-openssl-dev mafft libssl-dev ca-certificates -y - sudo apt-get install python3-pip python3-dev python3-pandas python3-requests python3-biopython -y + sudo apt-get install python3-pip python3-dev python3-pandas python3-pycurl python3-biopython -y python3 -m pip install --upgrade pip setuptools - pip3 install pytest fastcluster openpyxl pycurl + pip3 install pytest fastcluster openpyxl pip3 install -e . + sistr_init - name: Test with pytest run: | pytest -o log_cli=true --basetemp=tmp-pytest