Merge pull request #32 from oxford-pharmacoepi/Dev_mk1

Adding TABLESPACES to HES_APC Scripts

Author: adelmestri

sql_scripts/4f_hesapc_map_tbl_chunk.sql

@@ -4,22 +4,22 @@ CREATE SCHEMA IF NOT EXISTS {CHUNK_SCHEMA};
 --------------------------------
 DROP TABLE IF EXISTS {CHUNK_SCHEMA}.chunk_person;
 
-CREATE TABLE {CHUNK_SCHEMA}.chunk_person AS 
+CREATE TABLE {CHUNK_SCHEMA}.chunk_person TABLESPACE pg_default AS 
 	select (floor((row_number() over (order by person_id)-1)/{CHUNK_SIZE}) + 1)::int as chunk_id,
 	person_id
 	FROM {TARGET_SCHEMA}.person
 	order by chunk_id, person_id;
 
-ALTER TABLE {CHUNK_SCHEMA}.chunk_person ADD CONSTRAINT pk_chunk_person PRIMARY KEY (chunk_id, person_id);
-CREATE UNIQUE INDEX idx_chunk_person_id ON {CHUNK_SCHEMA}.chunk_person (chunk_id, person_id ASC);
+ALTER TABLE {CHUNK_SCHEMA}.chunk_person ADD CONSTRAINT pk_chunk_person PRIMARY KEY (chunk_id, person_id) USING INDEX TABLESPACE pg_default;
+CREATE UNIQUE INDEX idx_chunk_person_id ON {CHUNK_SCHEMA}.chunk_person (chunk_id, person_id ASC) TABLESPACE pg_default;
 CLUSTER {CHUNK_SCHEMA}.chunk_person USING idx_chunk_person_id;
 
 --------------------------------
 -- CHUNK
 --------------------------------
 DROP TABLE IF EXISTS {CHUNK_SCHEMA}.chunk;
 
-CREATE TABLE {CHUNK_SCHEMA}.chunk AS 
+CREATE TABLE {CHUNK_SCHEMA}.chunk TABLESPACE pg_default AS 
 SELECT distinct chunk_id,
 		null::varchar(20) as stem_source_tbl,
 		null::varchar(20) as stem_tbl,
@@ -28,10 +28,10 @@ SELECT distinct chunk_id,
 		0::smallint as completed 
 FROM {CHUNK_SCHEMA}.chunk_person;
 
-ALTER TABLE {CHUNK_SCHEMA}.chunk ADD CONSTRAINT pk_chunk PRIMARY KEY (chunk_id);
-CREATE UNIQUE INDEX idx_chunk_id ON {CHUNK_SCHEMA}.chunk (chunk_id ASC);
+ALTER TABLE {CHUNK_SCHEMA}.chunk ADD CONSTRAINT pk_chunk PRIMARY KEY (chunk_id) USING INDEX TABLESPACE pg_default;
+CREATE UNIQUE INDEX idx_chunk_id ON {CHUNK_SCHEMA}.chunk (chunk_id ASC) TABLESPACE pg_default;
 CLUSTER {CHUNK_SCHEMA}.chunk USING idx_chunk_id;
-CREATE INDEX idx_chunk_completed ON {CHUNK_SCHEMA}.chunk (completed);
+CREATE INDEX idx_chunk_completed ON {CHUNK_SCHEMA}.chunk (completed) TABLESPACE pg_default;
 
 --------------------------------
 -- _RECORDS
@@ -42,8 +42,7 @@ create table {TARGET_SCHEMA}._records (
 	{TARGET_SCHEMA}_records bigint DEFAULT 0,
 	{TARGET_SCHEMA}_nok_records bigint DEFAULT 0,
 	total_records bigint DEFAULT 0
-);
-
+) TABLESPACE pg_default;
 
 --------------------------------
 -- DROP TABLES CREATED BY CHUNKING

sql_scripts/4g_hesapc_map_tbl_stem_source.sql

@@ -1,5 +1,5 @@
 --insert into temp table from hes_diagnosis_epi
-CREATE TABLE {CHUNK_SCHEMA}.stem_source_{CHUNK_ID} (LIKE {TARGET_SCHEMA}.STEM_SOURCE);
+CREATE TABLE {CHUNK_SCHEMA}.stem_source_{CHUNK_ID} (LIKE {TARGET_SCHEMA}.STEM_SOURCE) TABLESPACE pg_default;
 
 WITH cte0 as (
 		select person_id
@@ -182,7 +182,7 @@ inner join {TARGET_SCHEMA}.visit_detail as t3 on t1.person_id = t3.person_id and
 LEFT JOIN cte3 AS t4 ON t1.person_id = t4.person_id and t1.visit_detail_source_value = t4.visit_detail_source_value
 WHERE t3.visit_detail_concept_id = 9201;	--Only visit records coming from hes_episodes
 
-create index idx_stem_source_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_source_{CHUNK_ID} (source_concept_id);
+create index idx_stem_source_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_source_{CHUNK_ID} (source_concept_id) TABLESPACE pg_default;
 
 -----------------------------------------
 -- UPDATE CHUNK

sql_scripts/4h_hesapc_map_tbl_stem.sql

@@ -7,7 +7,7 @@
 --drop index if exists {TARGET_SCHEMA}.idx_procedure_visit_id; -- NOT SURE WHERE THE PROCEDURE_OCCURRENCE TABLE IS USED ??
 --
 
-CREATE TABLE {CHUNK_SCHEMA}.stem_{CHUNK_ID} (LIKE {TARGET_SCHEMA}.STEM);
+CREATE TABLE {CHUNK_SCHEMA}.stem_{CHUNK_ID} (LIKE {TARGET_SCHEMA}.STEM) TABLESPACE pg_default;
 
 --insert into stem from stem_source, this is the vocab mapping portion
 with t as (
@@ -64,9 +64,9 @@ insert into {CHUNK_SCHEMA}.stem_{CHUNK_ID} (domain_id, person_id, visit_occurren
 										 anatomic_site_source_value, disease_status_source_value, modifier_concept_id, stem_source_table, stem_source_id)
 	select * from t;
 
-ALTER TABLE {CHUNK_SCHEMA}.stem_{CHUNK_ID} ADD CONSTRAINT pk_stem_{CHUNK_ID} PRIMARY KEY (id);
-create index idx_stem_domain_id_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_{CHUNK_ID} (domain_id, visit_occurrence_id);
-create index idx_stem_unit_source_value_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_{CHUNK_ID} (unit_source_value);
+ALTER TABLE {CHUNK_SCHEMA}.stem_{CHUNK_ID} ADD CONSTRAINT pk_stem_{CHUNK_ID} PRIMARY KEY (id) USING INDEX TABLESPACE pg_default;
+create index idx_stem_domain_id_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_{CHUNK_ID} (domain_id, visit_occurrence_id) TABLESPACE pg_default;
+create index idx_stem_unit_source_value_{CHUNK_ID} on {CHUNK_SCHEMA}.stem_{CHUNK_ID} (unit_source_value) TABLESPACE pg_default;
 
 
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