more content

Author: edward-burn

_book/adding_features.html

@@ -7,7 +7,7 @@
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
 
-<title>14&nbsp; Comparing cohorts – Tidy R programming with the OMOP common data model</title>
+<title>11&nbsp; Comparing cohorts – Tidy R programming with databases: applications with the OMOP common data model</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -80,7 +80,7 @@
       <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
         <i class="bi bi-layout-text-sidebar-reverse"></i>
       </button>
-        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./data_analysis.html">Data analysis</a></li><li class="breadcrumb-item"><a href="./comparing_cohorts.html"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></a></li></ol></nav>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./explore.html">Working with the OMOP CDM</a></li><li class="breadcrumb-item"><a href="./comparing_cohorts.html"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></a></li></ol></nav>
         <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
         </a>
       <button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
@@ -95,7 +95,7 @@
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
     <div class="pt-lg-2 mt-2 text-left sidebar-header">
     <div class="sidebar-title mb-0 py-0">
-      <a href="./">Tidy R programming with the OMOP common data model</a> 
+      <a href="./">Tidy R programming with databases: applications with the OMOP common data model</a> 
     </div>
       </div>
         <div class="mt-2 flex-shrink-0 align-items-center">
@@ -140,16 +140,16 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./r_data_models.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Database references in R</span></span></a>
+  <a href="./dbplyr_packages.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Building data pipelines</span></span></a>
   </div>
 </li>
       </ul>
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a href="./explore.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Getting to know the OMOP CDM</span></a>
+ <span class="menu-text">Working with the OMOP CDM</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
@@ -163,67 +163,38 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./omop_person_obs_period.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Person and observation period tables</span></span></a>
-  </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="./omop_vocabularies.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Vocabulary tables</span></span></a>
-  </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="./omop_clinical_tables.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Clinical tables</span></span></a>
-  </div>
-</li>
-      </ul>
-  </li>
-        <li class="sidebar-item sidebar-item-section">
-      <div class="sidebar-item-container"> 
-            <a href="./data_analysis.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Data analysis</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="true" aria-label="Toggle section">
-            <i class="bi bi-chevron-right ms-2"></i>
-          </a> 
-      </div>
-      <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth1 show">  
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
   <a href="./exploring_the_cdm.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">9</span>&nbsp; <span class="chapter-title">Exploring the OMOP CDM</span></span></a>
+ <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Exploring the OMOP CDM</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./creating_cohorts.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Adding cohorts to the CDM</span></span></a>
+ <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Adding cohorts to the CDM</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./adding_features.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Identifying patient characteristics</span></span></a>
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Identifying patient characteristics</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./working_with_cohorts.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">12</span>&nbsp; <span class="chapter-title">Working with cohorts</span></span></a>
+ <span class="menu-text"><span class="chapter-number">9</span>&nbsp; <span class="chapter-title">Working with cohorts</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./summarising_cohorts.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Summarising cohorts</span></span></a>
+ <span class="menu-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Summarising cohorts</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./comparing_cohorts.html" class="sidebar-item-text sidebar-link active">
- <span class="menu-text"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></span></a>
+ <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></span></a>
   </div>
 </li>
       </ul>
@@ -239,9 +210,9 @@
 <!-- main -->
 <main class="content" id="quarto-document-content">
 
-<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./data_analysis.html">Data analysis</a></li><li class="breadcrumb-item"><a href="./comparing_cohorts.html"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></a></li></ol></nav>
+<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./explore.html">Working with the OMOP CDM</a></li><li class="breadcrumb-item"><a href="./comparing_cohorts.html"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></a></li></ol></nav>
 <div class="quarto-title">
-<h1 class="title"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></h1>
+<h1 class="title"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Comparing cohorts</span></h1>
 </div>
 
 
@@ -682,7 +653,7 @@ <h1 class="title"><span class="chapter-number">14</span>&nbsp; <span class="chap
 <nav class="page-navigation">
   <div class="nav-page nav-page-previous">
       <a href="./summarising_cohorts.html" class="pagination-link" aria-label="Summarising cohorts">
-        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Summarising cohorts</span></span>
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Summarising cohorts</span></span>
       </a>          
   </div>
   <div class="nav-page nav-page-next">