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Protege plugin broken in P5 b21 #6

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dosumis opened this issue Jan 15, 2016 · 2 comments
Open

Protege plugin broken in P5 b21 #6

dosumis opened this issue Jan 15, 2016 · 2 comments

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@dosumis
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dosumis commented Jan 15, 2016

Pressing
image
=>

Uncaught Exception in thread 'AWT-EventQueue-0'
java.lang.NoSuchMethodError: org.semanticweb.owlapi.model.OWLOntologyManager.getOntologyFormat(Lorg/semanticweb/owlapi/model/OWLOntology;)Lorg/semanticweb/owlapi/model/OWLOntologyFormat;
at owltools.graph.OWLGraphWrapper.(OWLGraphWrapper.java:259) ~[na:na]
at org.geneontology.view.OboGraphView.update(OboGraphView.java:177) ~[na:na]
at org.geneontology.view.OboGraphView.access$200(OboGraphView.java:40) ~[na:na]
at org.geneontology.view.OboGraphView$3$1.run(OboGraphView.java:90) ~[na:na]
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) ~[na:1.8.0_40]
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:749) ~[na:1.8.0_40]
at java.awt.EventQueue.access$500(EventQueue.java:97) ~[na:1.8.0_40]
at java.awt.EventQueue$3.run(EventQueue.java:702) ~[na:1.8.0_40]
at java.awt.EventQueue$3.run(EventQueue.java:696) ~[na:1.8.0_40]
at java.security.AccessController.doPrivileged(Native Method) ~[na:1.8.0_40]
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) ~[na:1.8.0_40]
at java.awt.EventQueue.dispatchEvent(EventQueue.java:719) ~[na:1.8.0_40]
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [na:1.8.0_40]
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [na:1.8.0_40]

Happens with toy ontologies as well as full GO.

@premkumar-masilamani
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Hi Team - I get the same error now with any Ontology file. Is there a fix available?.

@cmungall
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I would like to port to P5 but unfortunately we don't have anyone allocated to work on this at the moment so I can't give a date when a fix will be available

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