Repositories list

• nexus-reqs

  Public
  Requirement Files for Nexus

  0•0•0•82•Updated Feb 24, 2025Feb 24, 2025

• bfx-tools-wdl

  Public
  WDL tasks for commonly used BFX tools

  genomicsngsngs-pipeline+ 4wdl-workflowbioinformaticswdlwdl-tasks

  WDL

  •5•5•6•0•Updated Feb 12, 2025Feb 12, 2025

• cookiecutter-django-reactjs

  Public
  Cookiecutter Django is a framework for jumpstarting production-ready Django and ReactJS projects quickly.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3k•90•2•46•Updated Feb 8, 2025Feb 8, 2025

• django-genomix

  Public
  Core library for Nexus django projects. Common utils needed across many apps

  pythondjangogenomics

  Python

  •

  MIT License

  •0•3•1•49•Updated Dec 18, 2024Dec 18, 2024

• django-genome

  Public
  Django app for dealing with Human Genome Reference data and keeping it up to date. Syncs data from HGNC and UCSC (RefSeq, etc)

  pythondjangobioinformatics+ 3genomicsgenomedjango-rest-framework

  Python

  •

  MIT License

  •0•9•1•52•Updated Dec 18, 2024Dec 18, 2024

• django-phenotype-ontologies

  Public
  Django app for parsing/loading Phenotype ontologies (HPO, MONDO, OncoTree, etc)

  djangobioinformaticsontologies+ 1phenotypes

  Python

  •

  MIT License

  •0•7•1•48•Updated Dec 12, 2024Dec 12, 2024

• django-user-activities

  Public
  Django app for dealing with User activities (likes, tags, comments, etc.)

  pythondjangodjango-rest-framework+ 1user-activity

  Python

  •

  MIT License

  •0•1•1•51•Updated Dec 11, 2024Dec 11, 2024

• react-genomix

  Public
  Core library for Nexus projects using ReactJS

  reactgenomicssemantic-ui+ 1reactjs

  JavaScript

  •

  MIT License

  •1•1•1•21•Updated Sep 6, 2024Sep 6, 2024

• somatic_variant_classification

  Public
  Machine learning classifier to distinguish sequencing artifacts from true SNVs in pediatric cancers

  Python

  •

  MIT License

  •0•3•0•2•Updated Jul 6, 2023Jul 6, 2023

• django-netezza

  Public
  Django Netezza backend using pyodbc

  Python

  •6•0•0•0•Updated Nov 19, 2019Nov 19, 2019

• varsim

  Public
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

  Java

  •

  BSD 2-Clause "Simplified" License

  •31•0•0•0•Updated Jun 7, 2019Jun 7, 2019

• cookiecutter-djangopackage

  Public
  A cookiecutter template for creating reusable Django packages quickly.

  Python

  •152•0•0•0•Updated May 31, 2019May 31, 2019

• CHOP_CancerPanel_Analysis

  Public
  Children's Hospital of Philadelphia Cancer Panel analysis and visualization

  R

  •1•0•0•0•Updated Feb 19, 2019Feb 19, 2019

• gcp-variant-transforms

  Public
  GCP Variant Transforms

  Python

  •

  Apache License 2.0

  •55•0•0•0•Updated Nov 6, 2018Nov 6, 2018

• OligoDesigner

  Public
  Java

  •0•1•0•0•Updated Apr 19, 2018Apr 19, 2018

• CHOP_SKDM

  Public
  SKDM is a tool to test for HLA allele and amino-acid differences between two populations.

  HTML

  •1•1•1•0•Updated Apr 11, 2018Apr 11, 2018

• cookiecutter-snakemake-analysis-pipeline

  Public
  A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

  Python

  •

  MIT License

  •4•0•0•0•Updated Jul 25, 2016Jul 25, 2016