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@CostelloLab University of Colorado Anschutz Medical Campus

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    17 repositories

    • omni-PLIER

      Public
      A Pathway-Level Information ExtractoR (PLIER) framework to gain mechanistic insights into obesity in Down syndrome
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • ImmunoMetabolicSubtypes

      Public
      R
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • BRSpred

      Public
      BCG Response Subtype predictor
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 12, 2024Aug 12, 2024

    • DS_transfer_mouse

      Public
      R
      •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • ML-Class

      Public
      Repository for code and data from the machine learning class in spring 2023.
      0•2•0•0•Updated Jun 2, 2023Jun 2, 2023

    • DenverFINRISKHacky

      Public
      Hackathon for the DREAM FINRISK Challenge cardiovascular event prediction from microbiome
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 18, 2023Apr 18, 2023

    • DS-celiac-GRS

      Public
      R
      •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • GSEA-InContext_Explorer

      Public
      Shiny app for gene set enrichment analysis using GSEA-InContext
      CSS
      •1•0•0•0•Updated Oct 12, 2019Oct 12, 2019

    • Shiny_metabolomics

      Public
      CSS
      •0•1•0•0•Updated Oct 12, 2019Oct 12, 2019

    • reticulated_app_example

      Public
      R
      •0•0•0•0•Updated Oct 5, 2019Oct 5, 2019

    • GSEA-InContext_noTk

      Public
      The GSEA-InContext package with all graphics- and plot-related functionality removed
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2019Oct 1, 2019

    • ProductBasis

      Public
      Product-basis method to simulate Boolean network models
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Sep 1, 2019Sep 1, 2019

    • Trisomy21_KYN_metabolomics

      Public
      R
      •2•6•0•0•Updated Aug 26, 2019Aug 26, 2019

    • MetaAnalysis_GeneExpression_GSEA

      Public
      Curated gene expression data for meta-analysis of gene rank and GSEA results
      0•0•0•0•Updated Aug 10, 2019Aug 10, 2019

    • MMR_Bladder_Cancer

      Public
      0•0•0•0•Updated Oct 31, 2018Oct 31, 2018

    • GSEA-InContext

      Public
      Gene Set Enrichment Analysis in Python
      Python
      •
      MIT License
      •122•11•0•1•Updated Oct 26, 2018Oct 26, 2018

    • GSEARerank

      Public
      Java
      •1•1•0•0•Updated Oct 11, 2017Oct 11, 2017