Schema error: AttributeError: 'str' object has no attribute 'isValid'

[cmarshak]

I used the default yml files here: https://github.com/cmarshak/DSWX-SAR/tree/main/src/dswx_sar/defaults

As illustrated in this notebook, I run something to the effect:

from dswx_sar.dswx_runconfig import RunConfig, WORKFLOW_SCRIPTS_DIR
from dataclasses import dataclass

run_config_path = <RUNCONFIG_PATH>

@dataclass
class Args:
    """placeholder"""
    debug_mode = False
    log_file = log_path

cfg = RunConfig.load_from_yaml(str(run_config_path), 'dswx_s1', args)

I get:

Validation fail for algorithm_parameter_s1 runconfig yaml /Users/cmarshak/bekaert-team/dswx-sar-workflow-pst/out/S1A_IW_SLC__1SDV_20240108T232450_20240108T232517_052022_06495E_2EAD/params.yml.
---------------------------------------------------------------------------
YamaleError                               Traceback (most recent call last)
File ~/bekaert-team/DSWX-SAR/src/dswx_sar/dswx_runconfig.py:114, in load_validate_yaml(yaml_path, workflow_name)
    113 try:
--> 114     yamale.validate(schema, data)
    115 except yamale.YamaleError as yamale_err:

File ~/mambaforge/envs/dswx_s1/lib/python3.11/site-packages/yamale/yamale.py:43, in validate(schema, data, strict, _raise_error)
     42 if _raise_error and not is_valid:
---> 43     raise YamaleError(results)
     44 return results

YamaleError: Error validating data '/Users/cmarshak/bekaert-team/dswx-sar-workflow-pst/out/S1A_IW_SLC__1SDV_20240108T232450_20240108T232517_052022_06495E_2EAD/params.yml' with schema '/Users/cmarshak/bekaert-team/DSWX-SAR/src/dswx_sar/schemas/algorithm_parameter_s1.yaml'
	runconfig.processing.initial_threshold.selection_method: 'combined' is not a list.

During handling of the above exception, another exception occurred:

AttributeError                            Traceback (most recent call last)
Cell In[16], line 1
----> 1 cfg = RunConfig.load_from_yaml(str(run_config_path), 'dswx_s1', args)

File ~/bekaert-team/DSWX-SAR/src/dswx_sar/dswx_runconfig.py:399, in RunConfig.load_from_yaml(cls, yaml_path, workflow_name, args)
    396 sensor = product.split('_')[-1]
    397 ancillary = sns.dynamic_ancillary_file_group
--> 399 algorithm_cfg = load_validate_yaml(ancillary.algorithm_parameters,
    400                                    f'algorithm_parameter_{sensor.lower()}')
    402 # Check if input files have the requested polarizations and
    403 # sort the order of the polarizations.
    404 input_dir_list = \
    405     cfg['runconfig']['groups']['input_file_group']['input_file_path']

File ~/bekaert-team/DSWX-SAR/src/dswx_sar/dswx_runconfig.py:118, in load_validate_yaml(yaml_path, workflow_name)
    116     err_str = f'Validation fail for {workflow_name} runconfig yaml {yaml_path}.'
    117     logger.error(err_str)
--> 118     raise yamale.YamaleError(err_str) from yamale_err
    120 # load default runconfig
    121 parser = YAML(typ='safe')

File ~/mambaforge/envs/dswx_s1/lib/python3.11/site-packages/yamale/yamale_error.py:3, in YamaleError.__init__(self, results)
      2 def __init__(self, results):
----> 3     super(YamaleError, self).__init__('\n'.join([str(x) for x in list(filter(lambda x: not x.isValid(), results))]))
      4     self.message = self.args[0]
      5     self.results = results

File ~/mambaforge/envs/dswx_s1/lib/python3.11/site-packages/yamale/yamale_error.py:3, in YamaleError.__init__.<locals>.<lambda>(x)
      2 def __init__(self, results):
----> 3     super(YamaleError, self).__init__('\n'.join([str(x) for x in list(filter(lambda x: not x.isValid(), results))]))
      4     self.message = self.args[0]
      5     self.results = results

AttributeError: 'str' object has no attribute 'isValid'

The issue is here: https://github.com/cmarshak/DSWX-SAR/blob/main/src/dswx_sar/defaults/algorithm_parameter_s1.yaml#L58

Note the schema says it should be a list: https://github.com/cmarshak/DSWX-SAR/blob/main/src/dswx_sar/schemas/algorithm_parameter_s1.yaml#L52