diff --git a/bootstrap/helmfile.yaml b/bootstrap/helmfile.yaml
index 1b78d3f691169..3164abaa19ed0 100644
--- a/bootstrap/helmfile.yaml
+++ b/bootstrap/helmfile.yaml
@@ -49,14 +49,14 @@ releases:
   - name: flux-operator
     namespace: flux-system
     chart: oci://ghcr.io/controlplaneio-fluxcd/charts/flux-operator
-    version: 0.15.0
+    version: 0.16.0
     values: ['{{ requiredEnv "ROOT_DIR" }}/kubernetes/apps/flux-system/flux-operator/app/helm-values.yaml']
     needs: ['external-secrets/external-secrets']
 
   - name: flux-instance
     namespace: flux-system
     chart: oci://ghcr.io/controlplaneio-fluxcd/charts/flux-instance
-    version: 0.15.0
+    version: 0.16.0
     values: ['{{ requiredEnv "ROOT_DIR" }}/kubernetes/apps/flux-system/flux-operator/instance/helm-values.yaml']
     needs: ['flux-system/flux-operator']
     wait: false
diff --git a/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml b/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
index 0a0c4d329fe6d..376cd767a8a35 100644
--- a/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
+++ b/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
@@ -9,7 +9,7 @@ spec:
   chart:
     spec:
       chart: flux-operator
-      version: 0.15.0
+      version: 0.16.0
       sourceRef:
         kind: HelmRepository
         name: controlplaneio
diff --git a/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml b/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
index 0796925231be1..45f549cd1b6c5 100644
--- a/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
+++ b/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
@@ -9,7 +9,7 @@ spec:
   chart:
     spec:
       chart: flux-instance
-      version: 0.15.0
+      version: 0.16.0
       sourceRef:
         kind: HelmRepository
         name: controlplaneio