Change Log

1.2.3rc2

[2024.12.12] - Added --assembler auto to automatically detect assembler used

1.2.3rc1

[2024.12.12] - Added support for Pyrodigal and PyHMMSearch instead of FragGeneScan and HMMSearch
[2024.12.12] - Added support for precomputed genes via --proteins and --proteins_to_contigs arguments
[2024.12.11] - Changed .fasta to .fa extension
[2024.12.11] - Removed --prefix argument
[2024.12.11] - Removed --no_cut_tc and --mg_threshold because PyHMMSearch does not use coverage filter at the moment
[2024.12.11] - Changed output_path to output_directory with intermediate files being added in this directory only

Pending:

Add precomputed PyHMMSearch results