Professional Portfolio

Welcome to my professional portfolio. Although this portfolio is fundamentally for me to track my own professional and life development, I hope to have something valuable that I can share.

Professional Summary

• [Curriculum Vitae]
• Refereed Publications and Technical Reports
• Abstracts and Other Un-Refereed Works

Research Portfolio

• Statement of Research Interests
• Theme 1: How Life Works - The Rules of Biological Life on Earth
  • Annotated Publications
  • Biological and Biomedical Database Catalog
  • Trove-like Classifiers for Database Catalog
• Theme 2: How Life Can Be - The Alternate World of Artificial Lives and Intelligences
  • Annotated Publications
  • Tools: Digital Organisms Simulation Environment (DOSE)
• Theme 3: Computational and Statistical Tools for Research
  • Annotated Publications
  • Tools: Collection of Python Algorithms and Data Structures (COPADS)
  • Tools: Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
  • Tools: Digital Organisms Simulation Environment (DOSE)
  • Tools: Hypergraph Database Management System (HygDAS)
  • Tools: Mining Biomedical Literature for Molecular Interactions (Muscorian)
  • Tools: Notarization Code Generator and Logging Service (NotaLogger)
  • Tools: Technical (Analysis) and Applied Statistics System (TAPPS)
  • Tools: A Toolbox for Studying Bacteria, Archaea, and Complex Taxons (Bactome)
• Returns on Grants: Benchmark of Personal R&D Output

Teaching Portfolio

• Statement of Teaching Philosophy