extract_connectivity_matrices_v1.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 76,
   "id": "46709ffa-17ea-4823-b5aa-83f379c0096a",
   "metadata": {},
   "outputs": [],
   "source": [
    "from nilearn import datasets\n",
    "import pandas as pd\n",
    "from nilearn import plotting\n",
    "from nilearn.interfaces.fmriprep import load_confounds_strategy\n",
    "from nilearn.maskers import NiftiMapsMasker,NiftiLabelsMasker\n",
    "from nilearn.connectome import ConnectivityMeasure\n",
    "import os\n",
    "from pathlib import Path\n",
    "import numpy as np\n",
    "import abagen\n",
    "from dipy.io.image import load_nifti\n",
    "import nibabel as nib"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 77,
   "id": "e7c9557e-e9c0-460a-a75d-ec5bdbe8a7e7",
   "metadata": {},
   "outputs": [],
   "source": [
    "freesurfer_path =\"/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 78,
   "id": "d57fd57b-d4c1-445a-a26a-65eda77d3724",
   "metadata": {},
   "outputs": [],
   "source": [
    "path =Path(freesurfer_path) / 'A00025969/mri/FS_label.nii.gz'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "bbae5bc9-bec1-4eb1-8912-f0db9de49cc1",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 79,
   "id": "a87e77cd-82ef-4007-9f4a-36cd017839ee",
   "metadata": {},
   "outputs": [],
   "source": [
    "fs_prefix ='FS_label.nii.gz'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 80,
   "id": "98771f60-796b-4042-bbcc-7b1bdb9d54ed",
   "metadata": {},
   "outputs": [],
   "source": [
    "atlas = abagen.fetch_desikan_killiany()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 81,
   "id": "ee437668-96bb-4541-a98a-960c3d5e83ba",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'/opt/miniconda-latest/lib/python3.8/site-packages/abagen/data/atlas-desikankilliany.nii.gz'"
      ]
     },
     "execution_count": 81,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "atlas['image']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 82,
   "id": "19c8a46e-fdca-463f-9c9e-f3f838eedf49",
   "metadata": {},
   "outputs": [],
   "source": [
    "desikan_killiany_info =pd.read_csv(atlas['info'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 83,
   "id": "63ff62aa-c47a-4bdc-98c3-ab37fdbffd55",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Locate the data of the first subject\n",
    "data_path = '/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 84,
   "id": "384169af-5dca-49df-8b53-9501c2cc6112",
   "metadata": {},
   "outputs": [],
   "source": [
    "#atlas = datasets.fetch_atlas_schaefer_2018()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 85,
   "id": "6c78e8b1-4f82-4346-8ad3-8cccea6de6f7",
   "metadata": {},
   "outputs": [],
   "source": [
    "def preproc_atlas(atlas_data):\n",
    "    new_atlas_data =atlas_data.copy()\n",
    "    for elem, new_elem in zip(np.unique(atlas_data),list(range(np.unique(atlas_data).shape[0]))):\n",
    "        new_atlas_data[new_atlas_data==elem]=new_elem\n",
    "    return new_atlas_data "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 86,
   "id": "3086518a-9898-4532-b8ad-e6afa8af1af2",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Define plot function\n",
    "def show_slices(image, axis1=\"x\", axis2=\"y\", axis3=\"z\"):\n",
    "    slice_0 = image[round(len(image[0])/2), :, :]\n",
    "    slice_1 = image[:, round(len(image[1])/2), :]\n",
    "    slice_2 = image[:, :, round(len(image[2])/2)]\n",
    "    image = ([slice_0, slice_1, slice_2])\n",
    "    fig, axes = plt.subplots(1, len(image), figsize=[15,15])\n",
    "    for i, slice in enumerate(image):\n",
    "        axes[i].imshow(slice.T, cmap=\"gray\", origin=\"lower\")\n",
    "        axes[0].set(xlabel=axis2, ylabel=axis3)\n",
    "        axes[1].set(xlabel=axis1, ylabel=axis3)\n",
    "        axes[2].set(xlabel=axis1, ylabel=axis2)\n",
    "    plt.show()\n",
    "    \n",
    "def flatten_freesurfer_stats(path):\n",
    "    \"\"\"\n",
    "        Parses FreeSurfer statistics then flattens included table of brain structure features into 1-row table as DataFrame.\n",
    "    \"\"\"\n",
    "\n",
    "    from os.path import basename\n",
    "    import pandas as pd\n",
    "    from plumbum.colors import fatal\n",
    "\n",
    "    try:\n",
    "        # Get line with column names from file of FreeSurfer statistics.\n",
    "        ColHeader = next(filter(lambda line: line.startswith('# ColHeaders'), open(path).readlines()))\n",
    "        # Ignore first '#', 'ColHeaders'. Leave column names only.\n",
    "        names = ColHeader.split()[2:] \n",
    "        data = pd.read_csv(path, names=names, comment='#', delim_whitespace=True, dtype=str)\n",
    "#         columns = [col for col in filter(\n",
    "#             lambda column: column not in ['Index', 'SegId', 'StructName'],\n",
    "#             data.columns\n",
    "#         )]\n",
    "#         StructNames = data['StructName']\n",
    "#         data = pd.DataFrame(data[columns].T.values.flatten()).T\n",
    "\n",
    "#         # Get prefix (e.g. 'rh') from file name like ``rh.aparc.stats``\n",
    "#         # as suffix for names of 1-row columns had been flattened from DataFrame.\n",
    "#         filename = basename(path).split('.')\n",
    "#         suffix = [filename[0]] if len(filename) > 2 else [] # There is no prefix from file name like ``aseg.stats``\n",
    "#         data.columns = ['_'.join([prefix, infix] + suffix) for infix in columns for prefix in StructNames]\n",
    "        return data[['SegId','StructName']]\n",
    "    except StopIteration:\n",
    "        print(fatal | \"There is no header with column names starting with ColHeaders in the file\", path)\n",
    "    except FileNotFoundError as e:\n",
    "        print(fatal | str(e))\n",
    "    except KeyError as e:\n",
    "        print(fatal | \"There is no column\", str(e))\n",
    "    return pd.DataFrame()    "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 87,
   "id": "ede8f6ff-b74e-4ee3-8696-fc641699ce5d",
   "metadata": {},
   "outputs": [],
   "source": [
    "def get_dtk_labels(atlas_data):\n",
    "    data =flatten_freesurfer_stats('column_names.txt')\n",
    "    data['SegId'] =data['SegId'].astype(int)\n",
    "    data=data.drop_duplicates(subset=['SegId'])\n",
    "    labels =data.loc[data.SegId.isin(np.unique(atlas_data).tolist())]['StructName'].to_list()\n",
    "    return labels"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 88,
   "id": "d20a83dc-11c7-4d13-a3b4-f9e4fec8c6f8",
   "metadata": {},
   "outputs": [],
   "source": [
    "def extract_correlation_pipe(func,subj, atlas):\n",
    "    print(\"extraction: \")\n",
    "    # Loading atlas image stored in 'maps'\n",
    "    atlas_filename = Path(freesurfer_path) / f'{subj.split(\"-\")[-1]}/mri/aparc.DKTatlas+aseg.nii'\n",
    "    # Loading atlas data stored in 'labels'\n",
    "    \n",
    "    atlas_data, affine, _ =load_nifti(atlas_filename, return_img=True)\n",
    "    \n",
    "    labels =get_dtk_labels(atlas_data)[1:]\n",
    "    print(atlas_data.shape)\n",
    "    print(labels)\n",
    "    print(\"labels: \", len(labels))\n",
    "    \n",
    "    \n",
    "    confounds_simple, mask =load_confounds_strategy(func)\n",
    "\n",
    "    # masker = NiftiMapsMasker(maps_img=atlas_filename, standardize=True,\n",
    "    #                      memory='nilearn_cache', verbose=5)\n",
    "    # from nilearn.maskers import NiftiLabelsMasker\n",
    "    masker = NiftiLabelsMasker(labels_img=atlas_filename, standardize=True, resampling_target='labels',\n",
    "                           memory='nilearn_cache', verbose=5)\n",
    "    \n",
    "    time_series = masker.fit_transform(func, confounds =confounds_simple)\n",
    "    print(time_series.shape)\n",
    "    \n",
    "    correlation_measure = ConnectivityMeasure(kind='correlation')\n",
    "    correlation_matrix = correlation_measure.fit_transform([time_series])[0]\n",
    "    np.fill_diagonal(correlation_matrix, 0)\n",
    "    \n",
    "    print(correlation_matrix.shape)\n",
    "    data =pd.DataFrame(correlation_matrix, columns=labels, index =labels)\n",
    "    corr_dict ={}\n",
    "    for i, column in enumerate(data.columns):\n",
    "        for j in data.columns[:i]:\n",
    "            corr_value =data.loc[j,column]\n",
    "            corr_dict[f'{j}-{column}'] =corr_value\n",
    "    return  corr_dict,data, pd.DataFrame(time_series,columns=labels)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 89,
   "id": "c935c2b6-0d10-4b80-9274-7cff893f49f8",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "333"
      ]
     },
     "execution_count": 89,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(os.listdir(data_path))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "59a41a11-2c69-4d7d-86cd-24f9839dfbcd",
   "metadata": {
    "collapsed": true,
    "jupyter": {
     "outputs_hidden": true
    },
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00000838/func/sub-A00000838_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00000838/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00036844/func/sub-A00036844_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00036844/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00016197/func/sub-A00016197_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00016197/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00006754/func/sub-A00006754_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00006754/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00022509/func/sub-A00022509_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00022509/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00014590/func/sub-A00014590_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00014590/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00022400/func/sub-A00022400_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00022400/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00022727/func/sub-A00022727_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00022727/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00001251/func/sub-A00001251_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00001251/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00018317/func/sub-A00018317_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00018317/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00017147/func/sub-A00017147_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', '5th-Ventricle', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00017147/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00013816/func/sub-A00013816_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00013816/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00015759/func/sub-A00015759_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00015759/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00021598/func/sub-A00021598_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00021598/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00027787/func/sub-A00027787_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00027787/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00027969/func/sub-A00027969_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00027969/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00020414/func/sub-A00020414_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00020414/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00011265/func/sub-A00011265_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  105\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00011265/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 105)\n",
      "(105, 105)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00022810/func/sub-A00022810_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00022810/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00023866/func/sub-A00023866_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00023866/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00037619/func/sub-A00037619_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  107\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00037619/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 107)\n",
      "(107, 107)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00023750/func/sub-A00023750_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00023750/mri/aparc.DKTatlas+aseg.nii\n",
      "[Memory]0.1s, 0.0min    : Loading _filter_and_extract...\n",
      "__________________________________filter_and_extract cache loaded - 0.0s, 0.0min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00024372/func/sub-A00024372_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "No such file or no access: '/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00024372/mri/aparc.DKTatlas+aseg.nii'\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00024663/func/sub-A00024663_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Cerebral-Cortex', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00024663/mri/aparc.DKTatlas+aseg.nii\n",
      "________________________________________________________________________________\n",
      "[Memory] Calling nilearn.maskers.base_masker._filter_and_extract...\n",
      "_filter_and_extract('/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00024663/func/sub-A00024663_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', \n",
      "<nilearn.maskers.nifti_labels_masker._ExtractionFunctor object at 0x7f2df57c1790>, \n",
      "{ 'background_label': 0,\n",
      "  'detrend': False,\n",
      "  'dtype': None,\n",
      "  'high_pass': None,\n",
      "  'high_variance_confounds': False,\n",
      "  'labels': None,\n",
      "  'labels_img': PosixPath('/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00024663/mri/aparc.DKTatlas+aseg.nii'),\n",
      "  'low_pass': None,\n",
      "  'mask_img': None,\n",
      "  'reports': True,\n",
      "  'smoothing_fwhm': None,\n",
      "  'standardize': True,\n",
      "  'standardize_confounds': True,\n",
      "  'strategy': 'mean',\n",
      "  't_r': None,\n",
      "  'target_affine': array([[-1.000000e+00,  0.000000e+00,  0.000000e+00,  1.291851e+02],\n",
      "       [ 9.313226e-10,  0.000000e+00,  1.000000e+00, -9.597167e+01],\n",
      "       [ 0.000000e+00, -1.000000e+00,  0.000000e+00,  1.404699e+02],\n",
      "       [ 0.000000e+00,  0.000000e+00,  0.000000e+00,  1.000000e+00]]),\n",
      "  'target_shape': (256, 256, 256)}, confounds=[          cosine00      cosine01      cosine02        csf     rot_x  \\\n",
      "0    6.001206e-18 -3.750753e-19 -1.500301e-18  83.061525  0.006451   \n",
      "1    6.001206e-18 -3.750753e-19 -1.500301e-18  34.740018  0.003805   \n",
      "2    1.162411e-01  1.162215e-01  1.161887e-01  10.733544  0.003208   \n",
      "3    1.161887e-01  1.160120e-01  1.157177e-01   8.789899  0.003789   \n",
      "4    1.160840e-01  1.155935e-01  1.147776e-01   3.446241  0.004859   \n",
      "..            ...           ...           ...        ...       ...   \n",
      "145 -1.157177e-01  1.141327e-01 -1.115071e-01  -7.516414 -0.004152   \n",
      "146 -1.159270e-01  1.149667e-01 -1.133722e-01  -5.685265 -0.001771   \n",
      "147 -1.160840e-01  1.155935e-01 -1.147776e-01  -5.367728 -0.000829  ..., sample_mask=None, dtype=None, memory=Memory(location=nilearn_cache/joblib), memory_level=1, verbose=5)\n",
      "[NiftiLabelsMasker.transform_single_imgs] Loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00024663/func/sub-A00024663_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "[NiftiLabelsMasker.transform_single_imgs] Resampling images\n",
      "[NiftiLabelsMasker.transform_single_imgs] Extracting region signals\n",
      "[NiftiLabelsMasker.transform_single_imgs] Cleaning extracted signals\n",
      "____________________________________________filter_and_extract - 617.0s, 10.3min\n",
      "(150, 106)\n",
      "(106, 106)\n",
      "/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00028402/func/sub-A00028402_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "start\n",
      "extraction: \n",
      "(256, 256, 256)\n",
      "['Left-Cerebral-White-Matter', 'Left-Lateral-Ventricle', 'Left-Inf-Lat-Vent', 'Left-Cerebellum-White-Matter', 'Left-Cerebellum-Cortex', 'Left-Thalamus-Proper*', 'Left-Caudate', 'Left-Putamen', 'Left-Pallidum', '3rd-Ventricle', '4th-Ventricle', 'Brain-Stem', 'Left-Hippocampus', 'Left-Amygdala', 'CSF', 'Left-Accumbens-area', 'Left-VentralDC', 'Left-vessel', 'Left-choroid-plexus', 'Right-Cerebral-White-Matter', 'Right-Cerebral-Cortex', 'Right-Lateral-Ventricle', 'Right-Inf-Lat-Vent', 'Right-Cerebellum-White-Matter', 'Right-Cerebellum-Cortex', 'Right-Thalamus-Proper*', 'Right-Caudate', 'Right-Putamen', 'Right-Pallidum', 'Right-Hippocampus', 'Right-Amygdala', 'Right-Accumbens-area', 'Right-VentralDC', 'Right-vessel', 'Right-choroid-plexus', 'WM-hypointensities', 'Optic-Chiasm', 'CC_Posterior', 'CC_Mid_Posterior', 'CC_Central', 'CC_Mid_Anterior', 'CC_Anterior', 'ctx-lh-unknown', 'ctx-lh-caudalanteriorcingulate', 'ctx-lh-caudalmiddlefrontal', 'ctx-lh-cuneus', 'ctx-lh-entorhinal', 'ctx-lh-fusiform', 'ctx-lh-inferiorparietal', 'ctx-lh-inferiortemporal', 'ctx-lh-isthmuscingulate', 'ctx-lh-lateraloccipital', 'ctx-lh-lateralorbitofrontal', 'ctx-lh-lingual', 'ctx-lh-medialorbitofrontal', 'ctx-lh-middletemporal', 'ctx-lh-parahippocampal', 'ctx-lh-paracentral', 'ctx-lh-parsopercularis', 'ctx-lh-parsorbitalis', 'ctx-lh-parstriangularis', 'ctx-lh-pericalcarine', 'ctx-lh-postcentral', 'ctx-lh-posteriorcingulate', 'ctx-lh-precentral', 'ctx-lh-precuneus', 'ctx-lh-rostralanteriorcingulate', 'ctx-lh-rostralmiddlefrontal', 'ctx-lh-superiorfrontal', 'ctx-lh-superiorparietal', 'ctx-lh-superiortemporal', 'ctx-lh-supramarginal', 'ctx-lh-transversetemporal', 'ctx-lh-insula', 'ctx-rh-unknown', 'ctx-rh-caudalanteriorcingulate', 'ctx-rh-caudalmiddlefrontal', 'ctx-rh-cuneus', 'ctx-rh-entorhinal', 'ctx-rh-fusiform', 'ctx-rh-inferiorparietal', 'ctx-rh-inferiortemporal', 'ctx-rh-isthmuscingulate', 'ctx-rh-lateraloccipital', 'ctx-rh-lateralorbitofrontal', 'ctx-rh-lingual', 'ctx-rh-medialorbitofrontal', 'ctx-rh-middletemporal', 'ctx-rh-parahippocampal', 'ctx-rh-paracentral', 'ctx-rh-parsopercularis', 'ctx-rh-parsorbitalis', 'ctx-rh-parstriangularis', 'ctx-rh-pericalcarine', 'ctx-rh-postcentral', 'ctx-rh-posteriorcingulate', 'ctx-rh-precentral', 'ctx-rh-precuneus', 'ctx-rh-rostralanteriorcingulate', 'ctx-rh-rostralmiddlefrontal', 'ctx-rh-superiorfrontal', 'ctx-rh-superiorparietal', 'ctx-rh-superiortemporal', 'ctx-rh-supramarginal', 'ctx-rh-transversetemporal', 'ctx-rh-insula']\n",
      "labels:  106\n",
      "[NiftiLabelsMasker.wrapped] loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00028402/mri/aparc.DKTatlas+aseg.nii\n",
      "________________________________________________________________________________\n",
      "[Memory] Calling nilearn.maskers.base_masker._filter_and_extract...\n",
      "_filter_and_extract('/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00028402/func/sub-A00028402_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', \n",
      "<nilearn.maskers.nifti_labels_masker._ExtractionFunctor object at 0x7f2df59a99d0>, \n",
      "{ 'background_label': 0,\n",
      "  'detrend': False,\n",
      "  'dtype': None,\n",
      "  'high_pass': None,\n",
      "  'high_variance_confounds': False,\n",
      "  'labels': None,\n",
      "  'labels_img': PosixPath('/workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_freesurfer/A00028402/mri/aparc.DKTatlas+aseg.nii'),\n",
      "  'low_pass': None,\n",
      "  'mask_img': None,\n",
      "  'reports': True,\n",
      "  'smoothing_fwhm': None,\n",
      "  'standardize': True,\n",
      "  'standardize_confounds': True,\n",
      "  'strategy': 'mean',\n",
      "  't_r': None,\n",
      "  'target_affine': array([[-9.999999e-01,  0.000000e+00,  2.279194e-09,  1.278203e+02],\n",
      "       [ 1.446551e-09,  0.000000e+00,  1.000000e+00, -8.784747e+01],\n",
      "       [ 1.862645e-09, -1.000000e+00,  0.000000e+00,  1.397623e+02],\n",
      "       [ 0.000000e+00,  0.000000e+00,  0.000000e+00,  1.000000e+00]]),\n",
      "  'target_shape': (256, 256, 256)}, confounds=[          cosine00      cosine01      cosine02        csf     rot_x  \\\n",
      "0    6.001206e-18 -3.750753e-19 -1.500301e-18  59.271588  0.000187   \n",
      "1    6.001206e-18 -3.750753e-19 -1.500301e-18  24.174492 -0.000357   \n",
      "2    1.162411e-01  1.162215e-01  1.161887e-01   7.557026  0.000867   \n",
      "3    1.161887e-01  1.160120e-01  1.157177e-01   2.205409 -0.000105   \n",
      "4    1.160840e-01  1.155935e-01  1.147776e-01   0.749919  0.000930   \n",
      "..            ...           ...           ...        ...       ...   \n",
      "145 -1.157177e-01  1.141327e-01 -1.115071e-01   4.060457 -0.000274   \n",
      "146 -1.159270e-01  1.149667e-01 -1.133722e-01   1.817782  0.000529   \n",
      "147 -1.160840e-01  1.155935e-01 -1.147776e-01   1.876630 -0.000164  ..., sample_mask=None, dtype=None, memory=Memory(location=nilearn_cache/joblib), memory_level=1, verbose=5)\n",
      "[NiftiLabelsMasker.transform_single_imgs] Loading data from /workspace/home/datasets/mri/schizo_datasets/COBRE/COBRE_fmriprep/sub-A00028402/func/sub-A00028402_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz\n",
      "[NiftiLabelsMasker.transform_single_imgs] Resampling images\n"
     ]
    }
   ],
   "source": [
    "errrors =0\n",
    "corr_array =[]\n",
    "for subj in os.listdir(data_path):\n",
    "            brain_path =Path(f'{data_path}/{subj}/func/{subj}_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz')\n",
    "            if brain_path.exists():\n",
    "                try:\n",
    "                    print(str(brain_path))\n",
    "                    print(\"start\")\n",
    "                    corr_dict, data,time_series =extract_correlation_pipe(str(brain_path),subj, atlas)\n",
    "\n",
    "                    time_series.to_csv(f\"results/cobre_dk_big/{subj}_embed.csv\")\n",
    "                    data.to_csv(f\"results/cobre_dk_big/{subj}.csv\")\n",
    "                    corr_dict[\"id\"] =subj\n",
    "                    corr_array.append(corr_dict)\n",
    "                except Exception as e: \n",
    "                    print(e)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "16710299-e956-47c5-9e06-e2ce8418cd81",
   "metadata": {},
   "outputs": [],
   "source": [
    "errrors"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "15d217b6-d4d5-4a06-b4f6-25b8ecb527d2",
   "metadata": {},
   "outputs": [],
   "source": [
    "dataset_corr =pd.DataFrame.from_dict(corr_array)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 129,
   "id": "1b04fc12-f7d9-49ad-920b-21fffbd4a5ad",
   "metadata": {},
   "outputs": [],
   "source": [
    "dataset_corr.to_csv(\"results/cobre_dk_func_connectivity.csv\", index=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "b9c9025d-b20a-4aa6-a126-09077d096d97",
   "metadata": {},
   "outputs": [
    {
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       "      <td>0.243579</td>\n",
       "      <td>-0.130661</td>\n",
       "      <td>0.297445</td>\n",
       "      <td>0.252037</td>\n",
       "      <td>0.233951</td>\n",
       "      <td>0.203479</td>\n",
       "      <td>0.028686</td>\n",
       "      <td>0.631804</td>\n",
       "      <td>0.234953</td>\n",
       "      <td>...</td>\n",
       "      <td>-0.183302</td>\n",
       "      <td>0.590225</td>\n",
       "      <td>0.310319</td>\n",
       "      <td>0.339426</td>\n",
       "      <td>0.484776</td>\n",
       "      <td>0.462425</td>\n",
       "      <td>0.585187</td>\n",
       "      <td>0.331663</td>\n",
       "      <td>0.432210</td>\n",
       "      <td>sub-A00000838</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>0.349527</td>\n",
       "      <td>0.166937</td>\n",
       "      <td>0.037780</td>\n",
       "      <td>0.518068</td>\n",
       "      <td>0.570200</td>\n",
       "      <td>-0.049268</td>\n",
       "      <td>0.423871</td>\n",
       "      <td>0.470621</td>\n",
       "      <td>0.279740</td>\n",
       "      <td>0.579940</td>\n",
       "      <td>...</td>\n",
       "      <td>0.202921</td>\n",
       "      <td>0.345601</td>\n",
       "      <td>0.262245</td>\n",
       "      <td>0.378454</td>\n",
       "      <td>0.136927</td>\n",
       "      <td>0.364337</td>\n",
       "      <td>0.379389</td>\n",
       "      <td>0.167012</td>\n",
       "      <td>0.243261</td>\n",
       "      <td>sub-A00036844</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>0.401065</td>\n",
       "      <td>0.482765</td>\n",
       "      <td>0.168628</td>\n",
       "      <td>0.387949</td>\n",
       "      <td>0.481772</td>\n",
       "      <td>0.220805</td>\n",
       "      <td>0.393426</td>\n",
       "      <td>0.423376</td>\n",
       "      <td>0.425554</td>\n",
       "      <td>0.660514</td>\n",
       "      <td>...</td>\n",
       "      <td>0.016336</td>\n",
       "      <td>0.457874</td>\n",
       "      <td>0.572041</td>\n",
       "      <td>0.523497</td>\n",
       "      <td>0.370256</td>\n",
       "      <td>0.563198</td>\n",
       "      <td>0.669595</td>\n",
       "      <td>0.481019</td>\n",
       "      <td>0.664976</td>\n",
       "      <td>sub-A00016197</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0.310929</td>\n",
       "      <td>0.107777</td>\n",
       "      <td>0.046622</td>\n",
       "      <td>0.284062</td>\n",
       "      <td>0.422693</td>\n",
       "      <td>0.137627</td>\n",
       "      <td>0.198176</td>\n",
       "      <td>0.276744</td>\n",
       "      <td>0.316904</td>\n",
       "      <td>0.371812</td>\n",
       "      <td>...</td>\n",
       "      <td>0.226425</td>\n",
       "      <td>0.559681</td>\n",
       "      <td>0.465487</td>\n",
       "      <td>0.611576</td>\n",
       "      <td>0.522280</td>\n",
       "      <td>0.477719</td>\n",
       "      <td>0.679843</td>\n",
       "      <td>0.328467</td>\n",
       "      <td>0.632790</td>\n",
       "      <td>sub-A00006754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0.188564</td>\n",
       "      <td>0.492959</td>\n",
       "      <td>0.301123</td>\n",
       "      <td>0.502206</td>\n",
       "      <td>0.411595</td>\n",
       "      <td>0.700059</td>\n",
       "      <td>0.407204</td>\n",
       "      <td>0.272044</td>\n",
       "      <td>0.527731</td>\n",
       "      <td>0.699706</td>\n",
       "      <td>...</td>\n",
       "      <td>0.233161</td>\n",
       "      <td>0.478047</td>\n",
       "      <td>0.451229</td>\n",
       "      <td>0.492360</td>\n",
       "      <td>0.533554</td>\n",
       "      <td>0.612593</td>\n",
       "      <td>0.759704</td>\n",
       "      <td>0.582890</td>\n",
       "      <td>0.682155</td>\n",
       "      <td>sub-A00022509</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>158</th>\n",
       "      <td>0.559692</td>\n",
       "      <td>0.295075</td>\n",
       "      <td>-0.029420</td>\n",
       "      <td>0.365114</td>\n",
       "      <td>0.167520</td>\n",
       "      <td>0.617846</td>\n",
       "      <td>0.218856</td>\n",
       "      <td>0.083400</td>\n",
       "      <td>0.713139</td>\n",
       "      <td>0.713665</td>\n",
       "      <td>...</td>\n",
       "      <td>0.355720</td>\n",
       "      <td>0.499800</td>\n",
       "      <td>0.285608</td>\n",
       "      <td>0.549731</td>\n",
       "      <td>0.437570</td>\n",
       "      <td>0.651632</td>\n",
       "      <td>0.662262</td>\n",
       "      <td>0.509567</td>\n",
       "      <td>0.634970</td>\n",
       "      <td>sub-A00036555</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>159</th>\n",
       "      <td>0.245285</td>\n",
       "      <td>0.306978</td>\n",
       "      <td>0.219735</td>\n",
       "      <td>0.324521</td>\n",
       "      <td>0.496356</td>\n",
       "      <td>0.313257</td>\n",
       "      <td>0.223951</td>\n",
       "      <td>0.156788</td>\n",
       "      <td>0.643565</td>\n",
       "      <td>0.323000</td>\n",
       "      <td>...</td>\n",
       "      <td>0.068176</td>\n",
       "      <td>0.551244</td>\n",
       "      <td>0.477161</td>\n",
       "      <td>0.596740</td>\n",
       "      <td>0.459070</td>\n",
       "      <td>0.609822</td>\n",
       "      <td>0.550925</td>\n",
       "      <td>0.372481</td>\n",
       "      <td>0.645473</td>\n",
       "      <td>sub-A00028408</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>160</th>\n",
       "      <td>0.451213</td>\n",
       "      <td>0.502780</td>\n",
       "      <td>0.265650</td>\n",
       "      <td>0.514819</td>\n",
       "      <td>0.470581</td>\n",
       "      <td>0.446471</td>\n",
       "      <td>0.439187</td>\n",
       "      <td>0.189752</td>\n",
       "      <td>0.717910</td>\n",
       "      <td>0.552771</td>\n",
       "      <td>...</td>\n",
       "      <td>0.138148</td>\n",
       "      <td>0.482856</td>\n",
       "      <td>0.070284</td>\n",
       "      <td>0.416024</td>\n",
       "      <td>0.144757</td>\n",
       "      <td>0.140928</td>\n",
       "      <td>0.061069</td>\n",
       "      <td>-0.058819</td>\n",
       "      <td>0.432118</td>\n",
       "      <td>sub-A00023848</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>161</th>\n",
       "      <td>-0.055583</td>\n",
       "      <td>0.066227</td>\n",
       "      <td>0.706332</td>\n",
       "      <td>0.303548</td>\n",
       "      <td>0.433949</td>\n",
       "      <td>0.620989</td>\n",
       "      <td>0.366222</td>\n",
       "      <td>0.205589</td>\n",
       "      <td>0.380377</td>\n",
       "      <td>0.542283</td>\n",
       "      <td>...</td>\n",
       "      <td>0.215773</td>\n",
       "      <td>0.062470</td>\n",
       "      <td>0.123570</td>\n",
       "      <td>0.384804</td>\n",
       "      <td>-0.009421</td>\n",
       "      <td>0.229665</td>\n",
       "      <td>0.215678</td>\n",
       "      <td>0.254070</td>\n",
       "      <td>0.271250</td>\n",
       "      <td>sub-A00024228</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>162</th>\n",
       "      <td>0.507193</td>\n",
       "      <td>0.753536</td>\n",
       "      <td>0.617351</td>\n",
       "      <td>0.773349</td>\n",
       "      <td>0.595832</td>\n",
       "      <td>0.811537</td>\n",
       "      <td>0.645702</td>\n",
       "      <td>0.535843</td>\n",
       "      <td>0.740438</td>\n",
       "      <td>0.782954</td>\n",
       "      <td>...</td>\n",
       "      <td>0.244654</td>\n",
       "      <td>0.529446</td>\n",
       "      <td>0.469071</td>\n",
       "      <td>0.628897</td>\n",
       "      <td>0.501287</td>\n",
       "      <td>0.496010</td>\n",
       "      <td>0.637444</td>\n",
       "      <td>0.306171</td>\n",
       "      <td>0.553212</td>\n",
       "      <td>sub-A00023337</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>163 rows × 79801 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "     b'7Networks_LH_Vis_1'-b'7Networks_LH_Vis_2'  \\\n",
       "0                                       0.469480   \n",
       "1                                       0.349527   \n",
       "2                                       0.401065   \n",
       "3                                       0.310929   \n",
       "4                                       0.188564   \n",
       "..                                           ...   \n",
       "158                                     0.559692   \n",
       "159                                     0.245285   \n",
       "160                                     0.451213   \n",
       "161                                    -0.055583   \n",
       "162                                     0.507193   \n",
       "\n",
       "     b'7Networks_LH_Vis_1'-b'7Networks_LH_Vis_3'  \\\n",
       "0                                       0.243579   \n",
       "1                                       0.166937   \n",
       "2                                       0.482765   \n",
       "3                                       0.107777   \n",
       "4                                       0.492959   \n",
       "..                                           ...   \n",
       "158                                     0.295075   \n",
       "159                                     0.306978   \n",
       "160                                     0.502780   \n",
       "161                                     0.066227   \n",
       "162                                     0.753536   \n",
       "\n",
       "     b'7Networks_LH_Vis_2'-b'7Networks_LH_Vis_3'  \\\n",
       "0                                      -0.130661   \n",
       "1                                       0.037780   \n",
       "2                                       0.168628   \n",
       "3                                       0.046622   \n",
       "4                                       0.301123   \n",
       "..                                           ...   \n",
       "158                                    -0.029420   \n",
       "159                                     0.219735   \n",
       "160                                     0.265650   \n",
       "161                                     0.706332   \n",
       "162                                     0.617351   \n",
       "\n",
       "     b'7Networks_LH_Vis_1'-b'7Networks_LH_Vis_4'  \\\n",
       "0                                       0.297445   \n",
       "1                                       0.518068   \n",
       "2                                       0.387949   \n",
       "3                                       0.284062   \n",
       "4                                       0.502206   \n",
       "..                                           ...   \n",
       "158                                     0.365114   \n",
       "159                                     0.324521   \n",
       "160                                     0.514819   \n",
       "161                                     0.303548   \n",
       "162                                     0.773349   \n",
       "\n",
       "     b'7Networks_LH_Vis_2'-b'7Networks_LH_Vis_4'  \\\n",
       "0                                       0.252037   \n",
       "1                                       0.570200   \n",
       "2                                       0.481772   \n",
       "3                                       0.422693   \n",
       "4                                       0.411595   \n",
       "..                                           ...   \n",
       "158                                     0.167520   \n",
       "159                                     0.496356   \n",
       "160                                     0.470581   \n",
       "161                                     0.433949   \n",
       "162                                     0.595832   \n",
       "\n",
       "     b'7Networks_LH_Vis_3'-b'7Networks_LH_Vis_4'  \\\n",
       "0                                       0.233951   \n",
       "1                                      -0.049268   \n",
       "2                                       0.220805   \n",
       "3                                       0.137627   \n",
       "4                                       0.700059   \n",
       "..                                           ...   \n",
       "158                                     0.617846   \n",
       "159                                     0.313257   \n",
       "160                                     0.446471   \n",
       "161                                     0.620989   \n",
       "162                                     0.811537   \n",
       "\n",
       "     b'7Networks_LH_Vis_1'-b'7Networks_LH_Vis_5'  \\\n",
       "0                                       0.203479   \n",
       "1                                       0.423871   \n",
       "2                                       0.393426   \n",
       "3                                       0.198176   \n",
       "4                                       0.407204   \n",
       "..                                           ...   \n",
       "158                                     0.218856   \n",
       "159                                     0.223951   \n",
       "160                                     0.439187   \n",
       "161                                     0.366222   \n",
       "162                                     0.645702   \n",
       "\n",
       "     b'7Networks_LH_Vis_2'-b'7Networks_LH_Vis_5'  \\\n",
       "0                                       0.028686   \n",
       "1                                       0.470621   \n",
       "2                                       0.423376   \n",
       "3                                       0.276744   \n",
       "4                                       0.272044   \n",
       "..                                           ...   \n",
       "158                                     0.083400   \n",
       "159                                     0.156788   \n",
       "160                                     0.189752   \n",
       "161                                     0.205589   \n",
       "162                                     0.535843   \n",
       "\n",
       "     b'7Networks_LH_Vis_3'-b'7Networks_LH_Vis_5'  \\\n",
       "0                                       0.631804   \n",
       "1                                       0.279740   \n",
       "2                                       0.425554   \n",
       "3                                       0.316904   \n",
       "4                                       0.527731   \n",
       "..                                           ...   \n",
       "158                                     0.713139   \n",
       "159                                     0.643565   \n",
       "160                                     0.717910   \n",
       "161                                     0.380377   \n",
       "162                                     0.740438   \n",
       "\n",
       "     b'7Networks_LH_Vis_4'-b'7Networks_LH_Vis_5'  ...  \\\n",
       "0                                       0.234953  ...   \n",
       "1                                       0.579940  ...   \n",
       "2                                       0.660514  ...   \n",
       "3                                       0.371812  ...   \n",
       "4                                       0.699706  ...   \n",
       "..                                           ...  ...   \n",
       "158                                     0.713665  ...   \n",
       "159                                     0.323000  ...   \n",
       "160                                     0.552771  ...   \n",
       "161                                     0.542283  ...   \n",
       "162                                     0.782954  ...   \n",
       "\n",
       "     b'7Networks_RH_Default_PFCdPFCm_13'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                            -0.183302                       \n",
       "1                                             0.202921                       \n",
       "2                                             0.016336                       \n",
       "3                                             0.226425                       \n",
       "4                                             0.233161                       \n",
       "..                                                 ...                       \n",
       "158                                           0.355720                       \n",
       "159                                           0.068176                       \n",
       "160                                           0.138148                       \n",
       "161                                           0.215773                       \n",
       "162                                           0.244654                       \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_1'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.590225                     \n",
       "1                                             0.345601                     \n",
       "2                                             0.457874                     \n",
       "3                                             0.559681                     \n",
       "4                                             0.478047                     \n",
       "..                                                 ...                     \n",
       "158                                           0.499800                     \n",
       "159                                           0.551244                     \n",
       "160                                           0.482856                     \n",
       "161                                           0.062470                     \n",
       "162                                           0.529446                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_2'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.310319                     \n",
       "1                                             0.262245                     \n",
       "2                                             0.572041                     \n",
       "3                                             0.465487                     \n",
       "4                                             0.451229                     \n",
       "..                                                 ...                     \n",
       "158                                           0.285608                     \n",
       "159                                           0.477161                     \n",
       "160                                           0.070284                     \n",
       "161                                           0.123570                     \n",
       "162                                           0.469071                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_3'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.339426                     \n",
       "1                                             0.378454                     \n",
       "2                                             0.523497                     \n",
       "3                                             0.611576                     \n",
       "4                                             0.492360                     \n",
       "..                                                 ...                     \n",
       "158                                           0.549731                     \n",
       "159                                           0.596740                     \n",
       "160                                           0.416024                     \n",
       "161                                           0.384804                     \n",
       "162                                           0.628897                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_4'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.484776                     \n",
       "1                                             0.136927                     \n",
       "2                                             0.370256                     \n",
       "3                                             0.522280                     \n",
       "4                                             0.533554                     \n",
       "..                                                 ...                     \n",
       "158                                           0.437570                     \n",
       "159                                           0.459070                     \n",
       "160                                           0.144757                     \n",
       "161                                          -0.009421                     \n",
       "162                                           0.501287                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_5'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.462425                     \n",
       "1                                             0.364337                     \n",
       "2                                             0.563198                     \n",
       "3                                             0.477719                     \n",
       "4                                             0.612593                     \n",
       "..                                                 ...                     \n",
       "158                                           0.651632                     \n",
       "159                                           0.609822                     \n",
       "160                                           0.140928                     \n",
       "161                                           0.229665                     \n",
       "162                                           0.496010                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_6'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.585187                     \n",
       "1                                             0.379389                     \n",
       "2                                             0.669595                     \n",
       "3                                             0.679843                     \n",
       "4                                             0.759704                     \n",
       "..                                                 ...                     \n",
       "158                                           0.662262                     \n",
       "159                                           0.550925                     \n",
       "160                                           0.061069                     \n",
       "161                                           0.215678                     \n",
       "162                                           0.637444                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_7'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.331663                     \n",
       "1                                             0.167012                     \n",
       "2                                             0.481019                     \n",
       "3                                             0.328467                     \n",
       "4                                             0.582890                     \n",
       "..                                                 ...                     \n",
       "158                                           0.509567                     \n",
       "159                                           0.372481                     \n",
       "160                                          -0.058819                     \n",
       "161                                           0.254070                     \n",
       "162                                           0.306171                     \n",
       "\n",
       "     b'7Networks_RH_Default_pCunPCC_8'-b'7Networks_RH_Default_pCunPCC_9'  \\\n",
       "0                                             0.432210                     \n",
       "1                                             0.243261                     \n",
       "2                                             0.664976                     \n",
       "3                                             0.632790                     \n",
       "4                                             0.682155                     \n",
       "..                                                 ...                     \n",
       "158                                           0.634970                     \n",
       "159                                           0.645473                     \n",
       "160                                           0.432118                     \n",
       "161                                           0.271250                     \n",
       "162                                           0.553212                     \n",
       "\n",
       "                id  \n",
       "0    sub-A00000838  \n",
       "1    sub-A00036844  \n",
       "2    sub-A00016197  \n",
       "3    sub-A00006754  \n",
       "4    sub-A00022509  \n",
       "..             ...  \n",
       "158  sub-A00036555  \n",
       "159  sub-A00028408  \n",
       "160  sub-A00023848  \n",
       "161  sub-A00024228  \n",
       "162  sub-A00023337  \n",
       "\n",
       "[163 rows x 79801 columns]"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dataset_corr"
   ]
  }
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