Minor bug fixes

conftest.py

@@ -95,7 +95,6 @@ def pytest_generate_tests(metafunc):
         ))
     metafunc.definition.own_markers = []
     for args, values, ids, indirect in new_markers:
-        print(args)
         metafunc.parametrize(
             args,
             values,

glyles/glycans/poly/glycan.py

@@ -357,7 +357,7 @@ def save_dot(self, output, horizontal=False):
         else:
             graph = pydot.Dot("iupac_tree")
         for node in range(len(self.parse_tree.nodes)):
-            graph.add_node(pydot.Node(node, label=self.parse_tree.nodes[node]["type"].get_name(full=True)))
+            graph.add_node(pydot.Node(node, label=self.parse_tree.nodes[node]["type"].get_name("full")))
         for edge in self.parse_tree.edges():
             graph.add_edge(pydot.Edge(*edge[::-1], label=self.parse_tree.get_edge_data(*edge)["type"]))
         graph.write(output)

glyles/glycans/poly/walker.py

@@ -32,7 +32,7 @@ def parse(self, t):
                 self.parse_int(c)
         return self.g, self.full and len(list(nx.connected_components(self.g.to_undirected()))) == 1
 
-    def parse_int(self, t, parent: int):
+    def parse_int(self, t):
         """
         Parse a parsed tree (AST) from ANTLR into this networkx graph.
 

tests/test_smiles.py

@@ -59,8 +59,9 @@ def test_smiles_mono(self, data):
         compare_smiles(computed, sol)
 
     @pytest.mark.parametrize("root_orientation", ["n", "a", "b"])
-    @pytest.mark.parametrize("iupac, plain, alpha, beta", smiles_samples_simple)
-    def test_smiles_poly(self, iupac, plain, alpha, beta, root_orientation):
+    @pytest.mark.parametrize("data", smiles_samples_simple)
+    def test_smiles_poly(self, data, root_orientation):
+        iupac, plain, alpha, beta = data
         computed = Glycan(iupac, root_orientation=root_orientation).get_smiles()
 
         if root_orientation == "a":