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environment.yml
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name: snomed-parser
channels:
- defaults
- conda-forge
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- asttokens=3.0.0=pyhd8ed1ab_1
- ca-certificates=2025.1.31=hbcca054_0
- comm=0.2.2=pyhd8ed1ab_1
- debugpy=1.8.12=py39hf88036b_0
- decorator=5.1.1=pyhd8ed1ab_1
- exceptiongroup=1.2.2=pyhd8ed1ab_1
- executing=2.1.0=pyhd8ed1ab_1
- importlib-metadata=8.6.1=pyha770c72_0
- ipykernel=6.29.5=pyh3099207_0
- ipython=8.18.1=pyh707e725_3
- jedi=0.19.2=pyhd8ed1ab_1
- jupyter_client=8.6.3=pyhd8ed1ab_1
- jupyter_core=5.7.2=pyh31011fe_1
- krb5=1.21.3=h143b758_0
- ld_impl_linux-64=2.40=h12ee557_0
- libedit=3.1.20230828=h5eee18b_0
- libffi=3.4.4=h6a678d5_1
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgomp=14.2.0=h77fa898_1
- libsodium=1.0.20=h4ab18f5_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-ng=11.2.0=h1234567_1
- matplotlib-inline=0.1.7=pyhd8ed1ab_1
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=pyhd8ed1ab_1
- openssl=3.4.0=h7b32b05_1
- packaging=24.2=pyhd8ed1ab_2
- parso=0.8.4=pyhd8ed1ab_1
- pexpect=4.9.0=pyhd8ed1ab_1
- pickleshare=0.7.5=pyhd8ed1ab_1004
- pip=25.0=py39h06a4308_0
- platformdirs=4.3.6=pyhd8ed1ab_1
- prompt-toolkit=3.0.50=pyha770c72_0
- psutil=6.1.1=py39h8cd3c5a_0
- ptyprocess=0.7.0=pyhd8ed1ab_1
- pure_eval=0.2.3=pyhd8ed1ab_1
- pygments=2.19.1=pyhd8ed1ab_0
- python=3.9.21=he870216_1
- python-dateutil=2.9.0.post0=pyhff2d567_1
- python_abi=3.9=2_cp39
- pyzmq=26.2.1=py39h4e4fb57_0
- readline=8.2=h5eee18b_0
- setuptools=75.8.0=py39h06a4308_0
- six=1.17.0=pyhd8ed1ab_0
- sqlite=3.45.3=h5eee18b_0
- stack_data=0.6.3=pyhd8ed1ab_1
- tk=8.6.14=h39e8969_0
- tornado=6.4.2=py39h8cd3c5a_0
- traitlets=5.14.3=pyhd8ed1ab_1
- typing_extensions=4.12.2=pyha770c72_1
- wcwidth=0.2.13=pyhd8ed1ab_1
- wheel=0.45.1=py39h06a4308_0
- xz=5.4.6=h5eee18b_1
- zeromq=4.3.5=h3b0a872_7
- zipp=3.21.0=pyhd8ed1ab_1
- zlib=1.2.13=h5eee18b_1
- pip:
- annotated-types==0.7.0
- attrs==25.1.0
- blis==0.7.11
- catalogue==2.0.10
- certifi==2025.1.31
- charset-normalizer==3.4.1
- click==8.1.8
- cloudpathlib==0.20.0
- confection==0.1.5
- conllu==6.0.0
- contourpy==1.3.0
- cycler==0.12.1
- cymem==2.0.11
- cython==3.0.11
- fonttools==4.56.0
- idna==3.10
- importlib-resources==6.5.2
- iniconfig==2.0.0
- jinja2==3.1.5
- joblib==1.4.2
- jsonschema==4.23.0
- jsonschema-specifications==2024.10.1
- kiwisolver==1.4.7
- langcodes==3.5.0
- language-data==1.3.0
- marisa-trie==1.2.1
- markdown-it-py==3.0.0
- markupsafe==3.0.2
- matplotlib==3.9.4
- mdurl==0.1.2
- medspacy==1.3.1
- medspacy-quickumls==3.2
- medspacy-unqlite==0.9.6
- murmurhash==1.0.12
- nltk==3.9.1
- nmslib==2.1.1
- numpy==1.26.4
- owlready2==0.47
- pandas==2.2.3
- pillow==11.1.0
- pluggy==1.5.0
- preshed==3.0.9
- pybind11==2.6.1
- pydantic==2.10.6
- pydantic-core==2.27.2
- pyfastner==1.0.10
- pyparsing==3.2.1
- pyrush==1.0.9
- pysbd==0.3.4
- pysimstring==1.2.1
- pytest==8.3.4
- pytz==2025.1
- quicksectx==0.4.0
- referencing==0.36.2
- regex==2024.11.6
- requests==2.32.3
- rich==13.9.4
- rpds-py==0.22.3
- scikit-learn==1.6.1
- scipy==1.13.1
- scispacy==0.5.5
- seaborn==0.13.2
- shellingham==1.5.4
- smart-open==7.1.0
- spacy==3.7.5
- spacy-legacy==3.0.12
- spacy-loggers==1.0.5
- srsly==2.5.1
- thinc==8.2.5
- threadpoolctl==3.5.0
- tomli==2.2.1
- tqdm==4.67.1
- typer==0.15.1
- tzdata==2025.1
- unidecode==1.3.8
- urllib3==2.3.0
- wasabi==1.1.3
- weasel==0.4.1
- wrapt==1.17.2
prefix: /home/joe/miniconda3/envs/snomed-parser