selenzyme.xml

<tool id="selenzyme" name="Query Selenzyme: Enzyme sequence selection" version="0.1.0">
    <requirements>
        <requirement type="package">requests</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python toolSelenzyme.py $input $output
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="csv" />
    </inputs>
    <outputs>
        <data name="output1" format="csv" from_work_dir="out.csv" />
    </outputs>
    <help><![CDATA[
        usage: toolSelenzyme.py [-h] [-server SERVER] infile outfile

toolSelenzyme: Enzyme sequence selection. Pablo Carbonell, SYNBIOCHEM, 2019

positional arguments:
  infile          Input csv file.
  outfile         Input csv file.

optional arguments:
  -h, --help      show this help message and exit
  -server SERVER  Selenzyme server.

    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/bty065</citation>
    </citations>
</tool>