|
1 |
| -## Test evironments |
| 1 | +## Test environments 1.3.5 |
2 | 2 |
|
3 | 3 | * local OSX, Big Sur 11.2.1, R 4.0.2
|
4 | 4 | * Ubuntu Xenial 16.04 (on travis-ci)
|
|
7 | 7 | - using platform: x86_64-w64-mingw32 (64-bit)
|
8 | 8 | - using session charset: ISO8859-1
|
9 | 9 |
|
10 |
| -* Windows Server 2008 R2 SP1, R-devel, 32/64 bit |
11 |
| -* Ubuntu Linux 20.04.1 LTS, R-release, GCC |
12 |
| -* Fedora Linux, R-devel, clang, gfortran |
| 10 | +* Using |
13 | 11 |
|
14 |
| -## R CMD check results |
15 |
| - |
16 |
| -0 errors |
17 |
| -0 warnings |
18 |
| -1 NOTE about maintainer |
19 |
| - |
20 |
| - ... NOTE |
21 |
| - Maintainer: 'R. Wayne Oldford <rwoldford@uwaterloo.ca>' |
22 |
| - |
23 |
| -### Solaris and bioconductor package RgraphViz |
24 |
| - |
25 |
| -**rhub::check_on_solaris()**: |
26 |
| - |
27 |
| -1 Error (cannot find/install suggested package `Rgraphviz)` |
28 |
| - |
29 |
| - - Unable to determine a solution. (have tried adding BiocViews: to DESCRIPTION with no luck) |
30 |
| - |
31 |
| -- Preparing build, see status at |
32 |
| - |
33 |
| - https://builder.r-hub.io/status/loon_1.3.4.tar.gz-a8636ac65fcf46899d204dc1c39bafce |
34 |
| - |
35 |
| -... |
36 |
| - |
37 |
| - E checking package dependencies (3.5s) |
38 |
| - Package suggested but not available: ‘Rgraphviz’ |
39 |
| - |
40 |
| - The suggested packages are required for a complete check. |
41 |
| - Checking can be attempted without them by setting the environment |
42 |
| - variable _R_CHECK_FORCE_SUGGESTS_ to a false value. |
| 12 | + `devtools::check_rhub(env_vars=c(R_COMPILE_AND_INSTALL_PACKAGES = "always"))` |
| 13 | + |
| 14 | + - Windows Server 2008 R2 SP1, R-devel, 32/64 bit ... OK |
| 15 | + - linux-x86_64-fedora-clang & Ubuntu ... PREPERROR: |
| 16 | + |
| 17 | + Errors involve not finding bioconductor files and tcktk not loading |
| 18 | + |
| 19 | + |
| 20 | + Error : Bioconductor version '3.13' requires R version '4.1'; |
| 21 | + |
| 22 | + R version is too new; see https://bioconductor.org/install` |
| 23 | + |
| 24 | + |
| 25 | + AND |
43 | 26 |
|
44 |
| - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ |
45 |
| - manual. |
| 27 | + library(loon) |
46 | 28 |
|
47 |
| - |
48 |
| -**Relevant Snippet from Rhub**: |
49 |
| - |
50 |
| -- Installing package dependencies\ |
51 |
| - |
52 |
| -- Running R CMD check |
53 |
| - |
54 |
| - setting _R_CHECK_FORCE_SUGGESTS_ to false |
| 29 | + Loading required package: tcltk |
55 | 30 |
|
56 |
| - setting R_COMPILE_AND_INSTALL_PACKAGES to never |
| 31 | + Error: package or namespace load failed for ‘loon’: |
57 | 32 |
|
58 |
| - setting _R_CHECK_THINGS_IN_CHECK_DIR_ to false |
| 33 | + .onLoad failed in loadNamespace() for 'loon', details: |
59 | 34 |
|
60 |
| - setting R_REMOTES_STANDALONE to true |
| 35 | + call: structure(.External(.C_dotTcl, ...), class = "tclObj") |
61 | 36 |
|
62 |
| - setting R_REMOTES_NO_ERRORS_FROM_WARNINGS to true |
| 37 | + error: [tcl] no display name and no $DISPLAY environment variable. |
63 | 38 |
|
64 |
| - setting _R_CHECK_FORCE_SUGGESTS_ to true |
| 39 | + In addition: Warning message: |
65 | 40 |
|
66 |
| - setting _R_CHECK_CRAN_INCOMING_USE_ASPELL_ to true |
| 41 | + no DISPLAY variable so Tk is not available |
67 | 42 |
|
68 |
| -- using log directory 'C:/Users/USERzVBgqDuhyS/loon.Rcheck' |
69 |
| -- using R Under development (unstable) (2021-02-15 r80013) |
70 |
| -- using platform: x86_64-w64-mingw32 (64-bit) |
| 43 | + Execution halted` |
| 44 | + |
| 45 | + |
| 46 | + |
| 47 | +## R CMD check results |
| 48 | + |
| 49 | +0 errors |
| 50 | +0 warnings |
| 51 | +1 NOTE about maintainer |
| 52 | + |
| 53 | + ... NOTE |
| 54 | + Maintainer: 'R. Wayne Oldford <rwoldford@uwaterloo.ca>' |
71 | 55 |
|
72 |
| -## Downstream dependencies |
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