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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

Added

  • added pyproject.toml to specify build dependencies & build backend

Deprecated

  • freesurfer_volume_reader.parse_version_string

Removed

  • compatibility with python3.5, python3.6 & pandas<0.23

2.1.1 - 2021-06-11

Fixed

  • return type hint of parse_version_string() & VolumeFile.find()

2.1.0 - 2020-07-11

Added

  • support pandas v1.*

2.0.0 - 2019-08-08

Changed

  • python library: split class SubfieldVolumeFile from VolumeFile

Added

  • python library: class ashs.IntracranialVolumeFile
  • examples:
    • added ASHS
    • added comparison FreeSurfer vs. ASHS

Fixed

  • install: no longer require runtime dependencies to run setup.py

1.0.0 - 2019-05-05

Changed

  • console entry point freesurfer-volume-reader:
    • exit with code EX_NOINPUT/66 in case no matching volume files were found (previously: exception with exit code 1)
    • renamed param --filename-regex to --freesurfer-hipposf-filename-regex
  • python library:
    • renamed read_hippocampal_volume_file_dataframe() to freesurfer.HippocampalSubfieldsVolumeFile.read_volumes_dataframe()
    • renamed read_hippocampal_volumes_mm3() to freesurfer.HippocampalSubfieldsVolumeFile.read_volumes_mm3()
    • renamed parse_hippocampal_volume_file_path() to freesurfer.HippocampalSubfieldsVolumeFile.__init__()
    • renamed find_hippocampal_volume_files() to freesurfer.FreesurferHippocampalVolumeFile.find()

Added

  • console entry point freesurfer-volume-reader:
    • flag --version to show version
    • param --source-types to optionally enable collection of ASHS *volumes.txt files (default: freesurfer only)
    • param --ashs-filename-regex
  • python library: added class ashs.HippocampalSubfieldsVolumeFile to find & read ASHS *volumes.txt files

0.2.1 - 2019-04-28

Fixed

  • added pandas version constraint (required for pandas.DataFrame.drop)

0.2.0 - 2019-04-28

Added

  • accept multiple args for positional param root_dir_paths

Fixed

  • invalid root path when $SUBJECTS_DIR is set and root dir path is provided as positional arg

0.1.1 - 2019-04-27

Fixed

  • test read_hippocampal_volume_file_dataframe on python3.5

0.1.0 - 2019-04-26

Added

  • script freesurfer-volume-reader:
    • recursively collect Freesurfer's hippocampal subfield volume files
    • output in CSV-format
  • python module freesurfer_volume_reader