_site.yml

name: ITN Workshops at University of Michigan 2025
output_dir: 'docs'
navbar:
  title: University of Michigan Workshops 2025
  left:
  - text: ""
    href: index.html
    icon: fa-home
#  - text: Intro to Reproducibility
#    menu:
#    - text: Workshop Material
#      href: reproducibility_intro.html
#    - text: Activity
#      href: reproducibility_intro_activity.html
#  - text: Intermediate & Advanced Reproducibility
#    menu:
#    - text: Workshop Material
#      href: reproducibility_adv.html
#    - text: Activity
#      href: reproducibility_adv_activity.html
  - text: Analyzing Clinical Data
    menu:
    - text: Workshop Material
      href: clinical_data.html
    - text: Activity
      href: clinical_data_activity.html
  - text: Choosing Genomics Tools
    menu:
    - text: Workshop Material
      href: choosing_genomics_tools.html
    - text: Activity
      href: choosing_genomics_tools_activity.html
  - text: Spatial Transcriptomics
    menu:
    - text: Workshop Material
      href: st_tools.html
    - text: Activity
      href: st_tools_activity.html
  - text: ITN Home
    href: https://www.itcrtraining.org/home
#  - text: UM Resources
#    href:

output:
  html_document:
    theme: cosmo
    lib_dir: site_libs
    self_contained: no
    highlight: textmate
    css: styles.css
    includes:
       in_header: resources/header.html