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worm_development.obo
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format-version: 1.2
date: 15:11:2017 12:24
saved-by: danielaraciti
auto-generated-by: OBO-Edit 2.2-rc1
default-namespace: worm_development
remark: Version: 1.04
remark: Editors: Wen J. Chen & Daniela Raciti, WormBase, Caltech. Jane Lomax, Wellcome Trust Sanger Institute.
ontology: wbls
[Term]
id: WBls:0000001
name: free-living nematode stage
def: "The nematode life-cycle stage that occurs entirely outside of a host organism." [WB:jl]
is_a: WBls:0000101 ! Nematode life stage
created_by: jl16
creation_date: 2015-03-19T10:42:18Z
[Term]
id: WBls:0000002
name: all stages Ce
def: "All C. elegans development stages, including embryo, larva and adult stage." [WB:wjc]
synonym: "all stages" BROAD []
is_a: WBls:0000001 ! free-living nematode stage
[Term]
id: WBls:0000003
name: embryo Ce
def: "The whole period of embryogenesis, from the formation of an egg till its hatch." [WB:wjc]
synonym: "embryo" BROAD []
is_a: WBls:0000002 ! all stages Ce
is_a: WBls:0000102 ! nematode embryo
[Term]
id: WBls:0000004
name: proliferating embryo Ce
def: "0-350min after first cleavage at 20 Centigrade. Proliferate from 1 cell to 560 cells. From start of first cleavage till cleavage is over." [WB:wjc]
synonym: "early embryo" EXACT []
synonym: "proliferating embryo" BROAD []
relationship: part_of WBls:0000003 ! embryo Ce
[Term]
id: WBls:0000005
name: blastula embryo Ce
def: "0-100min after first cleavage at 20 Centigrade. Proliferate from 1 cell to 28 cells. From first cleavage till the start of gastrulation." [WB:wjc]
synonym: "blastula embryo" BROAD []
relationship: part_of WBls:0000004 ! proliferating embryo Ce
[Term]
id: WBls:0000006
name: 1-cell embryo Ce
def: "Also called zygote. -50min till 0min of first cleavage at 20 Centigrade. Contains 1 cell." [WB:wjc]
synonym: "1-cell embryo" BROAD []
synonym: "fertilized egg" EXACT [WB:dr]
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: starts_at_end_of WBls:0000669 ! unfertilized egg Ce
[Term]
id: WBls:0000007
name: 2-cell embryo Ce
def: "0-20min after first cleavage at 20 Centigrade. Contains 2 cells." [WB:wjc]
synonym: "2-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: starts_at_end_of WBls:0000006 ! 1-cell embryo Ce
[Term]
id: WBls:0000008
name: 4-cell embryo Ce
def: "20-40min after first cleavage at 20 Centigrade. Contains 4 cells." [WB:wjc]
synonym: "4-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: starts_at_end_of WBls:0000007 ! 2-cell embryo Ce
[Term]
id: WBls:0000009
name: 28-cell embryo Ce
def: "100-105 min after first cleaveage at 20 Centigrade. Contains 28 cells." [WB:wjc]
synonym: "28-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
[Term]
id: WBls:0000010
name: gastrulating embryo Ce
def: "100-290min after first cleavage at 20 Centigrade. Proliferate from 28 cells to 421 cells. Referring to the whole period of gastrulation." [WB:wjc]
synonym: "gastrulating embryo" BROAD []
relationship: part_of WBls:0000004 ! proliferating embryo Ce
relationship: starts_at_end_of WBls:0000005 ! blastula embryo Ce
[Term]
id: WBls:0000011
name: 51-cell embryo Ce
def: "120-135 min after first cleavage at 20 Centigrade. Contains 51 cells." [WB:wjc]
synonym: "51-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000086 ! 44-cell embryo Ce
[Term]
id: WBls:0000012
name: 88-cell embryo Ce
def: "145-150 min after first cleavage at 20 Centigrade. Contains 88 cells." [WB:wjc]
synonym: "88-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000088 ! 86-cell embryo Ce
[Term]
id: WBls:0000013
name: enclosing embryo Ce
def: "290-350min after first cleavage at 20 Centigrade. Proliferate from 421 cells to 560 cells. The stage when embryo just finished gastulation and is enclosing." [WB:wjc]
synonym: "enclosing embryo" BROAD []
relationship: part_of WBls:0000014 ! late cleavage stage embryo Ce
relationship: preceded_by WBls:0000014 ! late cleavage stage embryo Ce
relationship: starts_at_end_of WBls:0000010 ! gastrulating embryo Ce
[Term]
id: WBls:0000014
name: late cleavage stage embryo Ce
def: "210-350min after first cleavage at 20 Centigrade. Proliferate from 421 cells to 560 cells. The stage before the fast cleavage of cells finishes." [WB:wjc]
synonym: "late cleavage stage embryo" BROAD []
relationship: part_of WBls:0000004 ! proliferating embryo Ce
relationship: preceded_by WBls:0000010 ! gastrulating embryo Ce
[Term]
id: WBls:0000015
name: elongating embryo Ce
def: "350-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The stage that embryo starts elongation till elongation is over." [WB:wjc]
synonym: "elongating embryo" BROAD []
synonym: "mid embryo" EXACT []
relationship: part_of WBls:0000003 ! embryo Ce
relationship: preceded_by WBls:0000010 ! gastrulating embryo Ce
relationship: starts_at_end_of WBls:0000004 ! proliferating embryo Ce
[Term]
id: WBls:0000016
name: bean embryo Ce
def: "350-390min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. Emrbyo elongation started but have not formed comma shape yet. The shape of embryo looks like a lima bean. A stage right before comma embryo. Also called lima embryo or lima bean stage." [WB:wjc]
synonym: "bean embryo" BROAD []
relationship: part_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000013 ! enclosing embryo Ce
relationship: starts_at_end_of WBls:0000014 ! late cleavage stage embryo Ce
[Term]
id: WBls:0000017
name: comma embryo Ce
def: "390-420min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo looks like a comma. A stage between bean embryo and 1.5-fold embryo." [WB:wjc]
synonym: "comma embryo" BROAD []
relationship: part_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000016 ! bean embryo Ce
[Term]
id: WBls:0000018
name: 1.5-fold embryo Ce
def: "420-460min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and fold back 50%. A stage between comma embryo and 2-fold embryo." [WB:wjc]
synonym: "1.5-fold embryo" BROAD []
relationship: part_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000017 ! comma embryo Ce
[Term]
id: WBls:0000019
name: 2-fold embryo Ce
def: "460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo." [WB:wjc]
synonym: "2-fold embryo" BROAD []
relationship: part_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000018 ! 1.5-fold embryo Ce
[Term]
id: WBls:0000020
name: 3-fold embryo Ce
def: "520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage." [WB:wjc]
synonym: "3-fold embryo" BROAD []
relationship: part_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000019 ! 2-fold embryo Ce
[Term]
id: WBls:0000021
name: fully-elongated embryo Ce
def: "620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo." [WB:wjc]
synonym: "fully-elongated embryo" BROAD []
synonym: "late embryo" EXACT []
synonym: "morphogenetic stage" EXACT []
synonym: "pre-hatched embryo" EXACT []
relationship: part_of WBls:0000003 ! embryo Ce
relationship: starts_at_end_of WBls:0000015 ! elongating embryo Ce
relationship: starts_at_end_of WBls:0000020 ! 3-fold embryo Ce
[Term]
id: WBls:0000022
name: postembryonic Ce
def: "The stage after hatch till death." [WB:wjc]
synonym: "postembryonic" BROAD []
is_a: WBls:0000002 ! all stages Ce
is_a: WBls:0000103 ! postembryonic nematode
relationship: starts_at_end_of WBls:0000003 ! embryo Ce
[Term]
id: WBls:0000023
name: larva Ce
def: "From the time after hatch till becomes adult." [WB:wjc]
synonym: "larva" BROAD []
is_a: WBls:0000105 ! nematode larval stage
relationship: part_of WBls:0000022 ! postembryonic Ce
relationship: starts_at_end_of WBls:0000003 ! embryo Ce
[Term]
id: WBls:0000024
name: L1 larva Ce
def: "The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch." [WB:wjc]
synonym: "L1 larva" BROAD []
is_a: WBls:0000106 ! L1
relationship: part_of WBls:0000023 ! larva Ce
relationship: starts_at_end_of WBls:0000003 ! embryo Ce
[Term]
id: WBls:0000025
name: L1-L2 lethargus Ce
def: "The stage during L1-L2 molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L1-L2 lethargus" BROAD []
relationship: part_of WBls:0000026 ! L1-L2 molt Ce
[Term]
id: WBls:0000026
name: L1-L2 molt Ce
def: "The stage when an animal shifts from L1 larva to L2 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L1-L2 molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
relationship: starts_at_end_of WBls:0000024 ! L1 larva Ce
[Term]
id: WBls:0000027
name: L2 larva Ce
def: "The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch." [WB:wjc]
synonym: "L2 larva" BROAD []
is_a: WBls:0000107 ! L2
relationship: part_of WBls:0000023 ! larva Ce
relationship: preceded_by WBls:0000024 ! L1 larva Ce
relationship: starts_at_end_of WBls:0000026 ! L1-L2 molt Ce
[Term]
id: WBls:0000028
name: L2-L3 lethargus Ce
def: "The stage during L2-L3 molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L2-L3 lethargus" BROAD []
relationship: part_of WBls:0000029 ! L2-L3 molt Ce
[Term]
id: WBls:0000029
name: L2-L3 molt Ce
def: "The stage when an animal shifts from L2 larva to L3 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L2-L3 molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
relationship: starts_at_end_of WBls:0000027 ! L2 larva Ce
[Term]
id: WBls:0000030
name: L2d-dauer lethargus Ce
def: "The stage during L2d-dauer molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L2d-dauer lethargus" BROAD []
relationship: part_of WBls:0000031 ! L2d-dauer molt Ce
[Term]
id: WBls:0000031
name: L2d-dauer molt Ce
def: "The stage when an animal shifts from L2d larva to dauer larva. It includes the synthesis of new cuticle, cease of pharyngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L2d-dauer molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
[Term]
id: WBls:0000032
name: dauer larva Ce
def: "A third stage larva specialized for dispersal and long term survival." [ISBN:0-87969-433-5]
synonym: "dauer larva" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
relationship: preceded_by WBls:0000027 ! L2 larva Ce
[Term]
id: WBls:0000033
name: postdauer-L4 lethargus Ce
def: "The stage during postdauer-L4 molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "postdauer-L4 lethargus" BROAD []
relationship: part_of WBls:0000034 ! postdauer-L4 molt Ce
[Term]
id: WBls:0000034
name: postdauer-L4 molt Ce
def: "The stage when an animal shifts from post dauer stage to L4 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "postdauer-L4 molt" BROAD []
relationship: part_of WBls:0000052 ! post dauer stage Ce
[Term]
id: WBls:0000035
name: L3 larva Ce
def: "The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch." [WB:wjc]
synonym: "L3 larva" BROAD []
is_a: WBls:0000108 ! L3
relationship: part_of WBls:0000023 ! larva Ce
relationship: preceded_by WBls:0000027 ! L2 larva Ce
relationship: starts_at_end_of WBls:0000029 ! L2-L3 molt Ce
[Term]
id: WBls:0000036
name: L3-L4 lethargus Ce
def: "The stage during L3-L4 molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L3-L4 lethargus" BROAD []
relationship: part_of WBls:0000037 ! L3-L4 molt Ce
[Term]
id: WBls:0000037
name: L3-L4 molt Ce
def: "The stage when an animal shifts from L3 larva to L4 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L3-L4 molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
relationship: starts_at_end_of WBls:0000035 ! L3 larva Ce
[Term]
id: WBls:0000038
name: L4 larva Ce
def: "The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch." [WB:wjc]
synonym: "L4 larva" BROAD []
is_a: WBls:0000109 ! L4
relationship: part_of WBls:0000023 ! larva Ce
relationship: preceded_by WBls:0000035 ! L3 larva Ce
relationship: starts_at_end_of WBls:0000032 ! dauer larva Ce
relationship: starts_at_end_of WBls:0000037 ! L3-L4 molt Ce
[Term]
id: WBls:0000039
name: L4-adult lethargus Ce
def: "The stage during L4-adult molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L4-adult lethargus" BROAD []
relationship: part_of WBls:0000040 ! L4-adult molt Ce
[Term]
id: WBls:0000040
name: L4-adult molt Ce
def: "The stage when an animal shifts from L4 larva to adult. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L4-adult molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
[Term]
id: WBls:0000041
name: adult Ce
def: "The stage that begins when a C.elegans individual is fully-developed and has reached maturity." [WB:wjc]
synonym: "adult" BROAD []
is_a: WBls:0000104 ! nematode adult
relationship: part_of WBls:0000022 ! postembryonic Ce
relationship: preceded_by WBls:0000038 ! L4 larva Ce
relationship: starts_at_end_of WBls:0000023 ! larva Ce
relationship: starts_at_end_of WBls:0000040 ! L4-adult molt Ce
[Term]
id: WBls:0000042
name: L1-L2 ecdysis Ce
def: "The stage during L1-L2 molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L1-L2 ecdysis" BROAD []
relationship: part_of WBls:0000026 ! L1-L2 molt Ce
relationship: starts_at_end_of WBls:0000025 ! L1-L2 lethargus Ce
[Term]
id: WBls:0000043
name: L1-L2d molt Ce
def: "The stage when an animal shifts from L1 larva to L2d larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L1-L2d molt" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
[Term]
id: WBls:0000044
name: L1-L2d lethargus Ce
def: "The stage during L1-L2d molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L1-L2d lethargus" BROAD []
relationship: part_of WBls:0000043 ! L1-L2d molt Ce
[Term]
id: WBls:0000045
name: L1-L2d ecdysis Ce
def: "The stage during L1-L2d molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L1-L2d ecdysis" BROAD []
relationship: part_of WBls:0000043 ! L1-L2d molt Ce
[Term]
id: WBls:0000046
name: L2d larva Ce
def: "A special second stage larva with altered physiology and developmental potential that leads to formation of dauer larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch." [ISBN:0-87969-433-5]
synonym: "L2d larva" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
[Term]
id: WBls:0000047
name: L2-L3 ecdysis Ce
def: "The stage during L2-L3 molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L2-L3 ecdysis" BROAD []
relationship: part_of WBls:0000029 ! L2-L3 molt Ce
relationship: starts_at_end_of WBls:0000028 ! L2-L3 lethargus Ce
[Term]
id: WBls:0000048
name: L2d-dauer ecdysis Ce
def: "The stage during L2d-dauer molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L2d-dauer ecdysis" BROAD []
relationship: part_of WBls:0000031 ! L2d-dauer molt Ce
[Term]
id: WBls:0000049
name: L3-L4 ecdysis Ce
def: "The stage during L3-L4 molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L3-L4 ecdysis" BROAD []
relationship: part_of WBls:0000037 ! L3-L4 molt Ce
relationship: starts_at_end_of WBls:0000036 ! L3-L4 lethargus Ce
[Term]
id: WBls:0000050
name: L4-adult ecdysis
def: "The stage during L4-adult molt, after the brief lethargus period, when an animal shed off old cuticle." [WB:wjc]
relationship: part_of WBls:0000040 ! L4-adult molt Ce
relationship: starts_at_end_of WBls:0000039 ! L4-adult lethargus Ce
[Term]
id: WBls:0000051
name: postdauer-L4 ecdysis Ce
def: "The stage during postdauer-L4 molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "postdauer-L4 ecdysis" BROAD []
relationship: part_of WBls:0000034 ! postdauer-L4 molt Ce
[Term]
id: WBls:0000052
name: post dauer stage Ce
def: "The stage right after an animal recovered from dauer but has not started transformation to L4 larva yet." [WB:wjc]
synonym: "post dauer stage" BROAD []
relationship: part_of WBls:0000023 ! larva Ce
[Term]
id: WBls:0000053
name: L2d-L3 molt Ce
def: "The stage when an animal shifts from L2d larva to L3 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle." [WB:wjc]
synonym: "L2d-L3 molt" BROAD []
relationship: part_of WBls:0000046 ! L2d larva Ce
[Term]
id: WBls:0000054
name: L2d-L3 lethargus Ce
def: "The stage during L2d-L3 molt when an animal becomes lethargic, ceases pharyngeal pumping and synthesizes new cuticle under the old." [WB:wjc]
synonym: "L2d-L3 lethargus" BROAD []
relationship: part_of WBls:0000053 ! L2d-L3 molt Ce
[Term]
id: WBls:0000055
name: L2d-L3 ecdysis Ce
def: "The stage during L2d-L3 molt, after the brief lethargus period, when an animal sheds off old cuticle." [WB:wjc]
synonym: "L2d-L3 ecdysis" BROAD []
relationship: part_of WBls:0000053 ! L2d-L3 molt Ce
[Term]
id: WBls:0000056
name: adult male Ce
def: "The stage after an male animal is fully-developed and reaches maturity." [WB:wjc]
synonym: "adult male" BROAD []
is_a: WBls:0000041 ! adult Ce
[Term]
id: WBls:0000057
name: adult hermaphrodite Ce
def: "The stage after an hermaphrodite animal is fully-developed and reaches maturity." [WB:wjc]
synonym: "adult hermaphrodite" BROAD []
is_a: WBls:0000041 ! adult Ce
[Term]
id: WBls:0000058
name: pre-reproductive stage adult hermaphrodite Ce
def: "Very young adult hermaphrodites that do not have eggs in the uterus yet. At 20 Centigrade: 0 - 13 hours after L4-adult molt. 3 days after first cleaveage." [WB:wjc]
synonym: "pre-reproductive stage adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000059
name: parasitic nematode stage
def: "The nematode life-cycle stage that occurs entirely or partially within a host or vector organism." [WB:jl]
is_a: WBls:0000101 ! Nematode life stage
created_by: jl16
creation_date: 2015-03-19T10:44:40Z
[Term]
id: WBls:0000060
name: reproductive stage adult hermaphrodite Ce
def: "Adult hermaphrodites continuously laying fertilized eggs. Hermaphrodite in egg laying stages--usually up to 4/5 days after L4-adult molt at Centigrade. From the first fertilized egg is laid, till all sperms are used. At 20 Centigrade: 13 hours after L4-adult molt until about 5.4 days after the L4-adult molt. 3-8.4 days after first cleavage." [WB:wjc]
synonym: "reproductive stage adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000061
name: oocyte-laying stage adult hermaphrodite Ce
def: "When egg-laying is still going on but intermittent and during which a significant number of oocytes are laid. Included in reproductive stage adult hermaphrodite." [WB:wjc]
synonym: "oocyte-laying stage adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000062
name: post-reproductive stage adult hermaphrodite Ce
def: "Adult hermaphrodites that contain no more sperm, thus stop egg-laying, but still alive. At 20 Centigrade: 5.4 days after L4-adult molt until the death. 8.4 - 13.2 (average wild type life span) days after first cleavage." [WB:wjc]
synonym: "post-reproductive stage adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000063
name: newly molted young adult hermaphrodite Ce
def: "At 20 Centigrade: 0-24 hours after L4-adult molt." [WB:wjc]
synonym: "newly molted young adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000064
name: 1-day post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage." [WB:wjc]
synonym: "1-day post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
[Term]
id: WBls:0000065
name: 2-days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 48-72 hours after L4-adult molt. 5-6 days after first cleavage." [WB:wjc]
synonym: "2-days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000064 ! 1-day post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000066
name: 3-days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 72-96 hours after L4-adult molt. 6-7 days after first cleavage." [WB:wjc]
synonym: "3-days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000065 ! 2-days post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000067
name: 4-days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 96-120 hours after L4-adult molt. 7-8 days after first cleavage." [WB:wjc]
synonym: "4-days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000066 ! 3-days post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000068
name: 5-days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 5-6 days after L4-adult molt. 8-9 days after first cleavage." [WB:wjc]
synonym: "5-days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000067 ! 4-days post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000069
name: 4-7 days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 4-7 days after L4-adult molt. 7-10 days after first cleavage." [WB:wjc]
synonym: "4-7 days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000068 ! 5-days post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000070
name: 7-10 days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 7-10 days after L4-adult molt. 10-13 days after first cleavage." [WB:wjc]
synonym: "7-10 days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000069 ! 4-7 days post-L4 adult hermaphrodite Ce
[Term]
id: WBls:0000071
name: 8-cell embryo Ce
def: "~50 min after first cleavage at 20 Centigrade. Contains 8 cells." [WB:wjc]
synonym: "8-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: starts_at_end_of WBls:0000008 ! 4-cell embryo Ce
[Term]
id: WBls:0000072
name: 12-cell embryo Ce
def: "~55 min after first cleavage at 20 Centigrade. Contains 12 cells." [WB:wjc]
synonym: "12-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: preceded_by WBls:0000071 ! 8-cell embryo Ce
[Term]
id: WBls:0000073
name: L4 larva male Ce
def: "The fourth stage larva male. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch." [WB:wjc]
synonym: "L4 larva male" BROAD []
is_a: WBls:0000038 ! L4 larva Ce
[Term]
id: WBls:0000074
name: 11-15 days post-L4 adult hermaphrodite
def: "At 20 Centigrade: 11-15 days after L4-adult molt. 14-18 days after first cleavage." [WB:dr]
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: preceded_by WBls:0000674 ! 10-days post-L4 adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000070 ! 7-10 days post-L4 adult hermaphrodite Ce
created_by: danielaraciti
creation_date: 2012-05-22T14:35:04Z
[Term]
id: WBls:0000075
name: worm life stage
created_by: danielaraciti
creation_date: 2012-05-30T09:04:28Z
[Term]
id: WBls:0000076
name: Strongyloides life stage
def: "Any Strongyloides developmental stage, including free-living and parasitic stages." [WB:jl]
synonym: "all stages Strongyloides" EXACT []
is_a: WBls:0000101 ! Nematode life stage
created_by: jl16
creation_date: 2015-03-19T10:49:23Z
[Term]
id: WBls:0000077
name: Brugia sheathed microfilaria
alt_id: WBls:0000662
def: "Sheathed microfilaria larvae are surrounded by a membrane thought to be derived from the vitelline membrane." [WB:dr, WB:mb]
synonym: "Brugia immature microfilaria" EXACT []
synonym: "immature microfilaria Bma" RELATED []
synonym: "sheathed microfilaria" BROAD []
synonym: "sheathed microfilaria Bma" EXACT []
is_a: WBls:0000110 ! sheathed microfilaria
is_a: WBls:0000665 ! Brugia microfilaria
created_by: danielaraciti
creation_date: 2012-05-30T09:23:44Z
[Term]
id: WBls:0000079
name: Brugia L1
def: "The first stage larva." [WB:dr, WB:mb]
synonym: "L1" BROAD []
synonym: "L1 larva Bma" EXACT []
is_a: WBls:0000106 ! L1
relationship: part_of WBls:0000097 ! Brugia larval stage
relationship: starts_at_end_of WBls:0000663 ! Brugia unsheathed microfilaria
created_by: danielaraciti
creation_date: 2012-05-30T09:29:36Z
[Term]
id: WBls:0000080
name: Brugia L2
def: "The second stage larva. Derived from flight muscles of vector host; some development in vitro, with L1 to L2 moulting, has been demonstrated but rarely; these are often staged by hours or days post blood meal." [WB:dr, WB:mb]
synonym: "L2" BROAD []
synonym: "L2 larva Bma" EXACT []
is_a: WBls:0000107 ! L2
relationship: part_of WBls:0000097 ! Brugia larval stage
relationship: starts_at_end_of WBls:0000079 ! Brugia L1
created_by: danielaraciti
creation_date: 2012-05-30T09:30:40Z
[Term]
id: WBls:0000081
name: Brugia L3
def: "The third stage larva." [WB:dr, WB:mb]
synonym: "L3" BROAD []
synonym: "L3 larva Bma" EXACT []
is_a: WBls:0000108 ! L3
relationship: part_of WBls:0000097 ! Brugia larval stage
relationship: starts_at_end_of WBls:0000080 ! Brugia L2
created_by: danielaraciti
creation_date: 2012-05-30T09:31:06Z
[Term]
id: WBls:0000082
name: Brugia L4
def: "The fourth stage larva. Should be conditioned by days post infection; as moulting is not synchronous, some samples are defined as L3/L4, indicating a mix of individuals as late L3, moulting, and early L4." [WB:dr, WB:mb]
synonym: "L4" BROAD []
synonym: "L4 larva Bma" EXACT []
is_a: WBls:0000109 ! L4
relationship: part_of WBls:0000097 ! Brugia larval stage
relationship: starts_at_end_of WBls:0000081 ! Brugia L3
created_by: danielaraciti
creation_date: 2012-05-30T09:31:38Z
[Term]
id: WBls:0000083
name: Brugia adult
def: "The life-stage that begins when a B. malayi individual is fully-developed and has reached maturity. Adult B. malayi (or at least adult females) can live for 10 years in a human host, and can outlive their rodent laboratory hosts; it is usual to state the chronological age of the nematodes in days or months post-infection, and occasionally post-patency (the production of first microfilariae)." [WB:dr, WB:mb]
synonym: "adult" BROAD []
synonym: "adult Bma" EXACT []
is_a: WBls:0000104 ! nematode adult
relationship: part_of WBls:0000093 ! Brugia postembryonic stage
relationship: starts_at_end_of WBls:0000100 ! Brugia young adult
created_by: danielaraciti
creation_date: 2012-05-30T09:32:18Z
[Term]
id: WBls:0000084
name: 14-cell embryo Ce
def: "E-cell has divided into Ea and Ep. Contains 14 cells." [WB:dr, WB:WBPaper00046121]
comment: Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1.
synonym: "14-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: preceded_by WBls:0000072 ! 12-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-02T17:15:41Z
[Term]
id: WBls:0000085
name: 24-cell embryo Ce
def: "Fourth cleavage of the AB lineage. Contains 24 cells." [WB:dr, WB:WBPaper00046121]
comment: Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1.
synonym: "24-cell embryo" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: preceded_by WBls:0000084 ! 14-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-02T17:23:32Z
[Term]
id: WBls:0000086
name: 44-cell embryo Ce
def: "Fifth cleavage of the AB lineage. Contains 44 cells." [WB:dr, WB:WBPaper00046121]
comment: Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1.
synonym: "44-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000009 ! 28-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-02T17:25:18Z
[Term]
id: WBls:0000087
name: 68-cell embryo Ce
def: "Sixth cleavage of the AB lineage. Contains 68 cells." [WB:dr, WB:WBPaper00046121]
comment: Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1.
synonym: "68-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000011 ! 51-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-02T17:26:52Z
[Term]
id: WBls:0000088
name: 86-cell embryo Ce
def: "Seventh cleavage of the AB lineage. Contains 86 cells." [WB:dr, WB:WBPaper00046121]
comment: Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1.
synonym: "86-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000087 ! 68-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-02T17:27:50Z
[Term]
id: WBls:0000089
name: 190-cells embryo Ce
def: "P4 and M cells have finished migrating. Contains 190 cells." [WB:dr]
synonym: "190-cells embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000090 ! 96-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-15T13:19:10Z
[Term]
id: WBls:0000090
name: 96-cell embryo Ce
def: "155-165 min after first cleavage at 20 Centigrade. Contains 96 cells." [WB:dr]
synonym: "96-cell embryo" BROAD []
relationship: part_of WBls:0000010 ! gastrulating embryo Ce
relationship: preceded_by WBls:0000012 ! 88-cell embryo Ce
created_by: danielaraciti
creation_date: 2012-10-16T15:37:30Z
[Term]
id: WBls:0000091
name: Brugia life stage
def: "Any Brugia developmental stage, including embryo, larva and adult stage." [WB:dr, WB:jl, WB:mb]
synonym: "all stages Bma" BROAD []
is_a: WBls:0000059 ! parasitic nematode stage
created_by: danielaraciti
creation_date: 2013-11-12T03:18:57Z
[Term]
id: WBls:0000092
name: Brugia embryo
def: "The whole period of embryogenesis, from the formation of an egg till its hatch." [WB:dr]
synonym: "embryo" BROAD []
synonym: "embryo Bma" EXACT []
is_a: WBls:0000091 ! Brugia life stage
is_a: WBls:0000102 ! nematode embryo
created_by: danielaraciti
creation_date: 2013-11-12T04:48:28Z
[Term]
id: WBls:0000093
name: Brugia postembryonic stage
def: "The stage after hatch till death." [WB:dr]
synonym: "postembryonic Bma" EXACT []
synonym: "postembryonic stage" BROAD []
is_a: WBls:0000091 ! Brugia life stage
is_a: WBls:0000103 ! postembryonic nematode
relationship: starts_at_end_of WBls:0000092 ! Brugia embryo
created_by: danielaraciti
creation_date: 2013-11-12T04:50:29Z
[Term]
id: WBls:0000094
name: Brugia early embryo
def: "Proliferates from 1 to 100 cells. As the Brugia female reproductive tract is long (>10 cm), it is possible to dissect it and select early embryos just by isolating early parts of the post-spermatheca uterus." [WB:dr, WB:mb]
synonym: "early embryo" BROAD []
synonym: "early embryo Bma" EXACT []
relationship: part_of WBls:0000092 ! Brugia embryo
created_by: danielaraciti
creation_date: 2013-11-12T04:55:53Z
[Term]
id: WBls:0000095
name: Brugia middle embryo
def: "Proliferates from 100 cells to Lima bean stage." [WB:dr, WB:mb]
synonym: "middle embryo" BROAD []
synonym: "middle embryo Bma" EXACT []
relationship: part_of WBls:0000092 ! Brugia embryo
relationship: starts_at_end_of WBls:0000094 ! Brugia early embryo
created_by: danielaraciti
creation_date: 2013-11-12T04:59:19Z
[Term]
id: WBls:0000096
name: Brugia late embryo
def: "From Lima bean to hatching." [WB:dr, WB:mb]
synonym: "late embryo" BROAD []
synonym: "late embryo Bma" EXACT []
relationship: part_of WBls:0000092 ! Brugia embryo
relationship: starts_at_end_of WBls:0000095 ! Brugia middle embryo
created_by: danielaraciti
creation_date: 2013-11-12T05:00:28Z
[Term]
id: WBls:0000097
name: Brugia larval stage
def: "From the time after hatch till becomes adult." [WB:dr]
synonym: "larva Bma" EXACT []
synonym: "larval stage" BROAD []
is_a: WBls:0000105 ! nematode larval stage
relationship: part_of WBls:0000093 ! Brugia postembryonic stage
relationship: starts_at_end_of WBls:0000092 ! Brugia embryo
created_by: danielaraciti
creation_date: 2013-11-12T05:12:19Z
[Term]
id: WBls:0000098
name: Brugia L3i
def: "Also known as infective L3, or iL3; i.e. isolated from the vector salivary glands; these samples may-should be conditioned by age, which is usually counted in days from the blood meal." [WB:dr, WB:mb]
synonym: "Brugia vector-derived L3" EXACT []
synonym: "iL3" RELATED []
synonym: "infective L3" RELATED []
synonym: "L3i" BROAD []
synonym: "vector-derived L3 Bma" EXACT []
is_a: WBls:0000081 ! Brugia L3
is_a: WBls:0000679 ! nematode infective stage larva
created_by: danielaraciti
creation_date: 2013-11-12T05:23:54Z
[Term]
id: WBls:0000099
name: Brugia post-infection L3
def: "Derived from the host after reintroduction by vector feeding or manual inoculation; these piL3 samples are often-should be conditioned by age (hours or days post-infection)." [WB:dr, WB:mb]
synonym: "piL3" RELATED []
synonym: "post-infection L3" BROAD []
synonym: "post-infection L3 Bma" EXACT []
relationship: part_of WBls:0000081 ! Brugia L3
created_by: danielaraciti
creation_date: 2013-11-12T05:24:59Z
[Term]
id: WBls:0000100
name: Brugia young adult
def: "The animals have a significant \"prepatent\" period in the host, where they have moulted to adults but not yet started producing eggs or sperm; this stage is usually-should be conditioned by days post infection, with day 26 to approximately day 60 being the \"young adult\" in most systems - but note that the speed of development is different in different host genotypes." [WB:dr, WB:mb]
synonym: "young adult" BROAD []
synonym: "young adult Bma" EXACT []
relationship: part_of WBls:0000093 ! Brugia postembryonic stage
relationship: starts_at_end_of WBls:0000082 ! Brugia L4
created_by: danielaraciti
creation_date: 2013-11-12T05:37:52Z
[Term]
id: WBls:0000101
name: Nematode life stage
def: "Any developmental stage in a nematode, including embryo, larva and adult stage." [WB:dr, WB:jl]
synonym: "all stages nematode" EXACT []
synonym: "nematode developmental stage" EXACT []
is_a: WBls:0000075 ! worm life stage
created_by: danielaraciti
creation_date: 2013-11-25T06:13:37Z
[Term]
id: WBls:0000102
name: nematode embryo
def: "The whole period of embryogenesis, from the formation of an egg till its hatch." [WB:dr]
synonym: "embryo nematode" EXACT []
synonym: "nematode egg stage" EXACT []
is_a: WBls:0000101 ! Nematode life stage
created_by: danielaraciti
creation_date: 2013-11-25T06:14:14Z
[Term]
id: WBls:0000103
name: postembryonic nematode
def: "The stage after hatch till death." [WB:dr]
is_a: WBls:0000101 ! Nematode life stage
relationship: starts_at_end_of WBls:0000102 ! nematode embryo
created_by: danielaraciti
creation_date: 2013-11-25T06:14:39Z
[Term]
id: WBls:0000104
name: nematode adult
def: "The nematode life-stage that begins when the organism is fully-developed and has reached maturity." [WB:dr]
synonym: "adult nematode" EXACT []
synonym: "L5" EXACT []
is_a: WBls:0000103 ! postembryonic nematode
relationship: starts_at_end_of WBls:0000105 ! nematode larval stage
created_by: danielaraciti
creation_date: 2013-11-25T06:18:53Z
[Term]
id: WBls:0000105
name: nematode larval stage
def: "The stage that begins after hatching and ends when the nematode becomes adult." [WB:dr]
synonym: "larva nematode" EXACT []
synonym: "larval stage" BROAD []
synonym: "nematode larva" EXACT []
is_a: WBls:0000103 ! postembryonic nematode
created_by: danielaraciti
creation_date: 2013-11-25T06:19:27Z
[Term]
id: WBls:0000106
name: L1
def: "The first stage larva of nematodes." [WB:dr]
synonym: "L1 larva nematode" EXACT []
is_a: WBls:0000105 ! nematode larval stage
relationship: starts_at_end_of WBls:0000110 ! sheathed microfilaria
created_by: danielaraciti
creation_date: 2013-11-25T06:20:28Z
[Term]
id: WBls:0000107
name: L2
def: "The second stage larva of nematodes." [WB:dr]
synonym: "L2 larva nematode" EXACT []
is_a: WBls:0000105 ! nematode larval stage
relationship: starts_at_end_of WBls:0000106 ! L1
created_by: danielaraciti
creation_date: 2013-11-25T06:20:54Z
[Term]
id: WBls:0000108
name: L3
def: "The third stage larva of nematodes." [WB:dr]
synonym: "L3 larva nematode" EXACT []
is_a: WBls:0000105 ! nematode larval stage
relationship: starts_at_end_of WBls:0000107 ! L2
created_by: danielaraciti
creation_date: 2013-11-25T06:21:33Z
[Term]
id: WBls:0000109
name: L4
def: "The fourth stage larva of nematodes." [WB:dr]
synonym: "L4 larva nematode" EXACT []
is_a: WBls:0000105 ! nematode larval stage
relationship: starts_at_end_of WBls:0000108 ! L3
created_by: danielaraciti
creation_date: 2013-11-25T06:22:48Z
[Term]
id: WBls:0000110
name: sheathed microfilaria
def: "Sheathed microfilaria larvae are surrounded by a membrane thought to be derived from the vitelline membrane." [WB:dr]
synonym: "sheathed microfilaria nematode" EXACT []
synonym: "sheathed microfilariae" EXACT []
is_a: WBls:0000664 ! microfilaria
created_by: danielaraciti
creation_date: 2013-11-25T06:23:23Z
[Term]
id: WBls:0000111
name: 16-18 days post-L4 adult hermaphrodite Ce
def: "At 20 Centigrade: 16-18 days after L4-adult molt. 18-21 days after first cleavage." [WB:dr]
synonym: "16-18 days post-L4 adult hermaphrodite" BROAD []
relationship: part_of WBls:0000057 ! adult hermaphrodite Ce
relationship: preceded_by WBls:0000675 ! 15-days post-L4 adult hermaphrodite Ce
relationship: starts_at_end_of WBls:0000074 ! 11-15 days post-L4 adult hermaphrodite
created_by: danielaraciti
[Term]
id: WBls:0000112
name: 1 min post first-cleavage Ce
def: "The time period encompassing the 1st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree." [WB:dr, WB:WBPaper00000653]
synonym: "1 min post first-cleavage" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
created_by: danielaraciti
creation_date: 2014-04-25T09:29:36Z
[Term]
id: WBls:0000113
name: 2 min post first-cleavage Ce
def: "The time period encompassing the 2nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree." [WB:dr, WB:WBPaper00000653]
synonym: "2 min post first-cleavage" BROAD []
relationship: part_of WBls:0000005 ! blastula embryo Ce
relationship: starts_at_end_of WBls:0000112 ! 1 min post first-cleavage Ce
created_by: danielaraciti
creation_date: 2014-04-25T09:29:36Z
[Term]