DESCRIPTION

Package: oncomix
Title: Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA
    Expression Data
Version: 0.99.3
Author: Daniel Pique, John Greally, Jessica Mar
Maintainer: Daniel Pique <daniel.pique@med.einstein.yu.edu>
Description: This package helps identify mRNAs that are overexpressed in subsets
    of tumors relative to normal tissue. Ideal inputs would be paired tumor-normal
    data from the same tissue from many patients (>15 pairs). This unsupervised
    approach relies on the observation that oncogenes are characteristically
    overexpressed in only a subset of tumors in the population, and may help
    identify oncogene candidates purely based on differences in mRNA expression
    between previously unknown subtypes.
Depends:
    R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests:
    knitr,
    rmarkdown,
    testthat,
    RMySQL
Imports:
    ggplot2,
    ggrepel,
    RColorBrewer,
    mclust,
    stats,
    SummarizedExperiment
VignetteBuilder: knitr
biocViews: GeneExpression, Sequencing