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environment.yaml
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name: rnaseq
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- bcrypt=3.2.0=py36h7b6447c_0
- blas=1.0=openblas
- brotlipy=0.7.0=py36h27cfd23_1003
- ca-certificates=2021.10.8=ha878542_0
- certifi=2021.5.30=py36h06a4308_0
- cffi=1.14.6=py36h400218f_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cryptography=35.0.0=py36hd23ed53_0
- dbus=1.13.18=hb2f20db_0
- docutils=0.17.1=py36h06a4308_1
- dropbox=11.14.0=py36h06a4308_0
- expat=2.4.4=h295c915_0
- fastp=0.20.1=h2e03b76_1
- fastqc=0.11.9=hdfd78af_1
- filechunkio=1.6=py36_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- fontconfig=2.13.1=h6c09931_0
- freetype=2.11.0=h70c0345_0
- ftputil=3.2=py36_0
- glib=2.69.1=h4ff587b_1
- hdf5=1.10.6=hb1b8bf9_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- kallisto=0.46.2=h60f4f9f_2
- ld_impl_linux-64=2.35.1=h7274673_9
- libffi=3.3=he6710b0_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libiconv=1.15=h63c8f33_5
- libopenblas=0.3.18=hf726d26_0
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libuuid=1.0.3=h7f8727e_2
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- ncbi-ngs-sdk=2.10.4=hdf6179e_0
- ncurses=6.3=h7f8727e_2
- numpy=1.19.2=py36h6163131_0
- numpy-base=1.19.2=py36h75fe3a5_0
- openjdk=11.0.13=h87a67e3_0
- openssl=1.1.1n=h7f8727e_0
- pandas=1.1.5=py36ha9443f7_0
- parallel=20220222=ha770c72_0
- paramiko=2.8.1=pyhd3eb1b0_0
- pcre=8.45=h295c915_0
- perl=5.26.2=h14c3975_0
- perl-app-cpanminus=1.7044=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-mime-base64=3.15=pl526_1
- perl-parent=0.236=pl526_1
- perl-uri=1.76=pl526_0
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xsloader=0.24=pl526_0
- pip=21.2.2=py36h06a4308_0
- ply=3.11=py36_0
- psutil=5.8.0=py36h27cfd23_1
- pycparser=2.21=pyhd3eb1b0_0
- pynacl=1.4.0=py36h7b6447c_1
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pysftp=0.2.9=py36_0
- pysocks=1.7.1=py36_0
- python=3.6.13=h12debd9_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- pytz=2021.3=pyhd3eb1b0_0
- pyyaml=5.4.1=py36h27cfd23_1
- readline=8.1.2=h7f8727e_1
- requests=2.27.1=pyhd3eb1b0_0
- setuptools=58.0.4=py36h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- snakemake=3.13.3=py36_0
- sqlite=3.38.2=hc218d9a_0
- sra-tools=2.10.0=pl526he1b5a44_0
- stone=3.2.1=pyhd3eb1b0_0
- tk=8.6.11=h1ccaba5_0
- urllib3=1.26.8=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- wrapt=1.12.1=py36h7b6447c_1
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- zlib=1.2.12=h7f8727e_2
prefix: /home/dimitri/anaconda3/envs/rnaseq