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ginbergginberg
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testing
1 parent 6e85155 commit 0472cf0

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-2024
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‎tests/testthat/test-Incremental.R

+344-344
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‎tests/testthat/test-ResultsDataModel.R

+233-233
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‎tests/testthat/test-externalConceptCounts.R

+70-70
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test_that("Creating and checking externalConceptCounts table", {
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if (dbmsToTest == "sqlite") {
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connectionDetails <- testServers[["sqlite"]]$connectionDetails
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connection <- connect(connectionDetails)
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cdmDatabaseSchema <- testServers[["sqlite"]]$cdmDatabaseSchema
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conceptCountsTable <- "concept_counts"
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CohortDiagnostics::createConceptCountsTable(connectionDetails = connectionDetails,
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cdmDatabaseSchema = cdmDatabaseSchema,
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tempEmulationSchema = NULL,
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conceptCountsTable = "concept_counts",
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conceptCountsDatabaseSchema = cdmDatabaseSchema,
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conceptCountsTableIsTemp = FALSE,
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removeCurrentTable = TRUE)
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concept_counts_info <- querySql(connection, "PRAGMA table_info(concept_counts)")
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expect_equal(concept_counts_info$NAME, c("concept_id",
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"concept_count",
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"concept_subjects",
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"vocabulary_version"))
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checkConceptCountsTableExists <- DatabaseConnector::dbExistsTable(connection,
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name = conceptCountsTable,
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databaseSchema = cdmDatabaseSchema)
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expect_true(checkConceptCountsTableExists)
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# Checking vocab version matches
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useExternalConceptCountsTable <- TRUE
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conceptCountsTable <- "concept_counts"
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conceptCountsTable <- conceptCountsTable
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dataSourceInfo <- getCdmDataSourceInformation(connection = connection, cdmDatabaseSchema = cdmDatabaseSchema)
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vocabVersion <- dataSourceInfo$vocabularyVersion
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vocabVersionExternalConceptCountsTable <- renderTranslateQuerySql(
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connection = connection,
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sql = "SELECT DISTINCT vocabulary_version FROM @work_database_schema.@concept_counts_table;",
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work_database_schema = cdmDatabaseSchema,
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concept_counts_table = conceptCountsTable,
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snakeCaseToCamelCase = TRUE,
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tempEmulationSchema = getOption("sqlRenderTempEmulationSchena")
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)
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expect_equal(vocabVersion, vocabVersionExternalConceptCountsTable[1,1])
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}
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})
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test_that("Creating and checking externalConceptCounts temp table", {
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if (dbmsToTest == "sqlite") {
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# Creating externalConceptCounts
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# sql_lite_path <- file.path(test_path(), databaseFile)
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connectionDetails <- testServers[["sqlite"]]$connectionDetails
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connection <- connect(connectionDetails)
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cdmDatabaseSchema <- testServers[["sqlite"]]$cdmDatabaseSchema
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conceptCountsTable <- "concept_counts"
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CohortDiagnostics::createConceptCountsTable(connectionDetails = connectionDetails,
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cdmDatabaseSchema = cdmDatabaseSchema,
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tempEmulationSchema = NULL,
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conceptCountsTable = conceptCountsTable,
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conceptCountsDatabaseSchema = cdmDatabaseSchema,
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conceptCountsTableIsTemp = TRUE,
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removeCurrentTable = TRUE)
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concept_counts_info <- querySql(connection, "PRAGMA table_info(concept_counts)")
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expect_equal(concept_counts_info$NAME, c("concept_id",
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"concept_count",
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"concept_subjects"))
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checkConceptCountsTableExists <- DatabaseConnector::dbExistsTable(connection,
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name = conceptCountsTable,
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databaseSchema = cdmDatabaseSchema)
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expect_true(checkConceptCountsTableExists)
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}
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})
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# test_that("Creating and checking externalConceptCounts table", {
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# if (dbmsToTest == "sqlite") {
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# connectionDetails <- testServers[["sqlite"]]$connectionDetails
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# connection <- connect(connectionDetails)
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# cdmDatabaseSchema <- testServers[["sqlite"]]$cdmDatabaseSchema
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# conceptCountsTable <- "concept_counts"
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# CohortDiagnostics::createConceptCountsTable(connectionDetails = connectionDetails,
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# cdmDatabaseSchema = cdmDatabaseSchema,
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# tempEmulationSchema = NULL,
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# conceptCountsTable = "concept_counts",
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# conceptCountsDatabaseSchema = cdmDatabaseSchema,
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# conceptCountsTableIsTemp = FALSE,
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# removeCurrentTable = TRUE)
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#
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# concept_counts_info <- querySql(connection, "PRAGMA table_info(concept_counts)")
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# expect_equal(concept_counts_info$NAME, c("concept_id",
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# "concept_count",
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# "concept_subjects",
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# "vocabulary_version"))
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# checkConceptCountsTableExists <- DatabaseConnector::dbExistsTable(connection,
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# name = conceptCountsTable,
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# databaseSchema = cdmDatabaseSchema)
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# expect_true(checkConceptCountsTableExists)
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#
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# # Checking vocab version matches
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# useExternalConceptCountsTable <- TRUE
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# conceptCountsTable <- "concept_counts"
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# conceptCountsTable <- conceptCountsTable
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# dataSourceInfo <- getCdmDataSourceInformation(connection = connection, cdmDatabaseSchema = cdmDatabaseSchema)
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# vocabVersion <- dataSourceInfo$vocabularyVersion
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# vocabVersionExternalConceptCountsTable <- renderTranslateQuerySql(
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# connection = connection,
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# sql = "SELECT DISTINCT vocabulary_version FROM @work_database_schema.@concept_counts_table;",
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# work_database_schema = cdmDatabaseSchema,
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# concept_counts_table = conceptCountsTable,
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# snakeCaseToCamelCase = TRUE,
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# tempEmulationSchema = getOption("sqlRenderTempEmulationSchena")
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# )
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#
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# expect_equal(vocabVersion, vocabVersionExternalConceptCountsTable[1,1])
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# }
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#
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# })
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#
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# test_that("Creating and checking externalConceptCounts temp table", {
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# if (dbmsToTest == "sqlite") {
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# # Creating externalConceptCounts
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# # sql_lite_path <- file.path(test_path(), databaseFile)
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# connectionDetails <- testServers[["sqlite"]]$connectionDetails
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# connection <- connect(connectionDetails)
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# cdmDatabaseSchema <- testServers[["sqlite"]]$cdmDatabaseSchema
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# conceptCountsTable <- "concept_counts"
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# CohortDiagnostics::createConceptCountsTable(connectionDetails = connectionDetails,
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# cdmDatabaseSchema = cdmDatabaseSchema,
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# tempEmulationSchema = NULL,
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# conceptCountsTable = conceptCountsTable,
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# conceptCountsDatabaseSchema = cdmDatabaseSchema,
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# conceptCountsTableIsTemp = TRUE,
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# removeCurrentTable = TRUE)
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#
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# concept_counts_info <- querySql(connection, "PRAGMA table_info(concept_counts)")
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# expect_equal(concept_counts_info$NAME, c("concept_id",
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# "concept_count",
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# "concept_subjects"))
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# checkConceptCountsTableExists <- DatabaseConnector::dbExistsTable(connection,
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# name = conceptCountsTable,
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# databaseSchema = cdmDatabaseSchema)
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# expect_true(checkConceptCountsTableExists)
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# }
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# })

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