From 28cf0805415b86ae3224c4050a37689672674a5a Mon Sep 17 00:00:00 2001
From: Gavin Huttley <Gavin.Huttley@anu.edu.au>
Date: Tue, 13 Feb 2024 19:57:45 +1100
Subject: [PATCH] TST: added check for a valid alignment

---
 tests/test_aligndb.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/tests/test_aligndb.py b/tests/test_aligndb.py
index e6086de..3c0d896 100644
--- a/tests/test_aligndb.py
+++ b/tests/test_aligndb.py
@@ -3,7 +3,7 @@
 import numpy
 import pytest
 
-from cogent3 import make_seq
+from cogent3 import load_aligned_seqs, make_seq
 from cogent3.core.annotation_db import GffAnnotationDb
 
 from ensembl_lite._aligndb import (
@@ -593,3 +593,6 @@ def test_write_alignments(tmp_path):
         ref_species="human",
         show_progress=False,
     )
+    aln_path = list(tmp_path.glob("*"))[0]
+    aln = load_aligned_seqs(aln_path, moltype="dna")
+    assert len(aln) == 3