From e44111f675df33f6a1245861cc6bcb7098ef2051 Mon Sep 17 00:00:00 2001 From: Kristen Laricchia Date: Tue, 25 Feb 2025 14:51:49 -0500 Subject: [PATCH] small edits --- gnomad/assessment/validity_checks.py | 2 +- tests/assessment/test_validity_checks.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/gnomad/assessment/validity_checks.py b/gnomad/assessment/validity_checks.py index 72b05875..d659bf6a 100644 --- a/gnomad/assessment/validity_checks.py +++ b/gnomad/assessment/validity_checks.py @@ -106,7 +106,7 @@ def generic_field_check( if show_percent_sites: percent_failed = round(100 * (n_fail / ht_count), 2) - percent_failed_log = f" {percent_failed}%" + percent_failed_log = f" ({percent_failed}%)" else: percent_failed_log = "" diff --git a/tests/assessment/test_validity_checks.py b/tests/assessment/test_validity_checks.py index 12750e13..4c2a6bba 100644 --- a/tests/assessment/test_validity_checks.py +++ b/tests/assessment/test_validity_checks.py @@ -757,7 +757,7 @@ def test_compare_subset_freqs(ht_for_compare_subset_freqs, caplog) -> None: # Verify log messages. expected_logs = [ "PASSED AC_adj != AC_subset1_adj while non-zero check:", - "Found 1 sites that fail AC_raw != AC_subset1_raw while non-zero check:", + "Found 1 sites (33.33%) that fail AC_raw != AC_subset1_raw while non-zero check:", "Percentage of sites that fail: 33.33 %", "Total defined raw AC count: 3", ]