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Building the QIIME Virtual Box

Jai Ram Rideout edited this page Feb 27, 2015 · 24 revisions

https://docs.google.com/document/d/1F0rLYXkn4wPj83kIWzHb-sJzYJwtXKs3o073VRgOXQg/edit#heading=h.6z0xc9nyb9le

sudo apt-get install python-setuptools htop vim

sudo pip install numpy before the pip install --upgrade command in step 7

don't bother with changing the qiime temp dir

ipython notebook works, so skip that config

install chrome

IMPORTANT /etc/profile isn't sourced by terminals (since they're not login shells). How should we handle this?

message of the day will get annoying in the terminal (plus, I don't think it displays in non-login shells). What's a better way to make this information accessible? I (Jai) put this content in 0.QIIME_version.txt, modified it slightly from the AMI version so that it makes sense in the context of the Virtual Box

R libraries didn't get installed?

grab latest doc/vb_files/Before_you_start directory from qiime github repo, save on the desktop

create empty ~/Desktop/before_you_start directory

make chrome and firefox homepages point to help.qiime.org

Clone this wiki locally