diff --git a/src/api/services/ingestion.go b/src/api/services/ingestion.go index b6b0134..9c040c4 100644 --- a/src/api/services/ingestion.go +++ b/src/api/services/ingestion.go @@ -384,6 +384,8 @@ func (i *IngestionService) ProcessVcf( lineProcessingQueue := make(chan bool, lineProcessingConcurrencyLevel) // pattern for contig headers + // - sectioning off the chr prefix strips it from the contig name prior to ingestion, more or less preserving + // previous Gohan behaviour (which did a find and replace.) var contig_pattern = regexp.MustCompile(`##contig=