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[chrisgulvik]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• Make sure your code lints (nf-core lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <outdir>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[github-actions]

🦙 MegaLinter status: ⚠️ WARNING

Descriptor	Linter	Files	Fixed	Errors	Elapsed time
✅ BASH	bash-exec	2		0	0.01s
⚠️ BASH	shellcheck	2		3	0.1s
✅ BASH	shfmt	2	0	0	0.23s
⚠️ EDITORCONFIG	editorconfig-checker	168		1	0.77s
✅ JSON	jsonlint	2		0	0.17s
✅ JSON	prettier	2	0	0	0.82s
⚠️ MARKDOWN	markdownlint	24	0	2	2.07s
⚠️ MARKDOWN	markdown-link-check	25		2	52.63s
✅ MARKDOWN	markdown-table-formatter	25	0	0	0.41s
✅ PYTHON	ruff	5	0	0	0.36s
✅ REPOSITORY	gitleaks	yes		no	0.83s
✅ REPOSITORY	git_diff	yes		no	0.17s
✅ REPOSITORY	secretlint	yes		no	2.38s
✅ YAML	prettier	9	0	0	0.85s

See detailed report in MegaLinter reports

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