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fixing RDP file check warning #65

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fixing RDP file check warning #65

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1c5c095
fixing verify min file size in rdp module
taylorpaisie Feb 12, 2024
acc8942
Merge branch 'bacterial-genomics:dev' into dev
taylorpaisie Feb 12, 2024
5ac0213
Merge branch 'dev' into dev
taylorpaisie Feb 12, 2024
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3 changes: 2 additions & 1 deletion modules/local/classify_16S_rdp/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -26,12 +26,13 @@ process CLASSIFY_16S_RDP {
"!{barnapp_extracted_rna}"


if verify_minimum_file_size "!{meta.id}.RDP_Classification_File.tsv" '16S Classification Output File' "!{params.min_filesize_rdp_output}"; then
if verify_minimum_file_size "!{meta.id}.rdp.tsv" '16S Classification Output File' "!{params.min_filesize_rdp_output}"; then
echo -e "!{meta.id}\t16S RDP Output File\tPASS" >> !{meta.id}.RDP_Classification_File.tsv
else
echo -e "!{meta.id}\t16S RDP Output File\tFAIL" >> !{meta.id}.RDP_Classification_File.tsv
fi


# Get process version information
# RDP does not have a command for displaying the version
# The version being used currently is RDPv2.14
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