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Run prettier linter
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gregorysprenger committed Feb 9, 2024
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4 changes: 2 additions & 2 deletions docs/output.md
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Expand Up @@ -64,9 +64,9 @@ _Note: \<Assembler\> is the name of the assembler (SPAdes, SKESA) given to `--as
| CleanedReads/Trimmomatic | | **Trimmomatic Output** |
| | \<SampleName\>.trimmomatic.tsv | Discarded reads and singletons |
| CleanedReads/Hostile | | **Hostile host removal output** |
| | \<SampleName\>.Hostile-Removal.tsv | Summary of discarded reads and number of reads for downstream processes |
| | \<SampleName\>.Hostile-Removal.tsv | Summary of discarded reads and number of reads for downstream processes |
| CleanedReads/SRA-Human-Scrubber | | **SRA Human Scrubber host removal output** |
| | \<SampleName\>.SRA-Human-Scrubber-Removal.tsv | Summary of discarded reads and number of reads for downstream processes |
| | \<SampleName\>.SRA-Human-Scrubber-Removal.tsv | Summary of discarded reads and number of reads for downstream processes |
| <a id="summaries">Summaries</a> | | **Output Summaries** |
| | Summary.16S.tsv | Top BLAST hit results |
| | Summary.Assemblies.tsv | Contig summary information |
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