my-pubs.bib

@thesis{Antaya_2018,
  title = {Effects of {{Human Activity}} on the {{Distribution}} of {{Desert Bighorn Sheep Along}} the {{Border}} in {{Southwestern Arizona}} and {{Northern Sonora}}},
  author = {Antaya, Andrew Martyn},
  date = {2018},
  institution = {{The University of Arizona.}},
  url = {https://repository.arizona.edu/handle/10150/628159},
  urldate = {2023-09-29},
  abstract = {Changes in species distribution in areas with human activity may be the result of either spatial-temporal avoidance of those areas, or as the result of a decrease in survival and recruitment within those areas. My research examined the effects of human activity on the distribution of desert bighorn sheep (Ovis canadensis mexicana) along the border in southwestern Arizona, USA and northern Sonora, Mexico. I surveyed 33 transects (256 sites) on foot from February 2017 to January 2018, with 8 of 33 transects re-surveyed during this period. Human use at each site was indexed by trash category (0 pieces of trash, 1-10 pieces of trash, {$>$}10 pieces of trash). Bighorn sheep fecal pellets were used as detections of bighorn sheep. This study used a novel approach to survey replication. Old, white fecal pellets and newer, brown fecal pellets were used as the first and second temporal replicates of a survey, respectively. I used a hierarchical occupancy model to estimate probability of detection and occupancy, with human activity and environmental covariates as explanatory variables. Human activity as indexed by trash had a non-statistically significant but potentially biologically significant negative effect on occupancy. Elevational site position on mountain was positively related to occupancy in Mexico, but not in the USA. Height of the mountain above adjacent valley bottom was positively related to occupancy in the USA, but not in Mexico. These results suggest that bighorn sheep use habitat differently in the USA than in Mexico, likely due to the differences in human activity within each country. Small mountains should be recognized as habitat for desert bighorn sheep, even though in some areas, those features may be infrequently selected by sheep. Conservation efforts should recognize that 'atypical' bighorn sheep habitat may hold value for restoring or maintaining bighorn sheep populations.},
  langid = {american},
  keywords = {✅},
  annotation = {Accepted: 2018-06-27T17:45:11Z},
  file = {C:\Users\andre\Zotero\storage\4ARCDJ3Z\Antaya_2018_Effects of Human Activity on the Distribution of Desert Bighorn Sheep Along the.pdf}
}

@software{Antaya_2022c,
  title = {{{grazeR}}: {{R}} Package for Managing and Analyzing Data from Grazing Studies.},
  author = {Antaya, Andrew},
  date = {2022-11-10},
  origdate = {2022-10-22T18:03:11Z},
  url = {https://github.com/amantaya/grazeR},
  abstract = {An R package for managing and analyzing data from grazing studies.},
  keywords = {✅}
}

@software{Antaya_2022d,
  title = {The {{Rangelands Literature Map}} of {{Arizona}} - {{A Pilot Project}} for {{Place-Based Knowledge}}},
  author = {Antaya, Andrew M.},
  date = {2022-12-15},
  url = {https://amantaya.github.io/RangelandsLiteratureMap/},
  version = {v0.3.2},
  keywords = {✅,📎}
}

@software{Antaya_2023,
  title = {Python {{API}} to Retrieve Data from {{Vence Corp}}. Virtual Fence Collars.},
  shorttitle = {Amantaya/{{Vence-API}}},
  author = {Antaya, Andrew},
  date = {2023-02-02},
  doi = {10.5281/zenodo.8118524},
  url = {https://github.com/amantaya/Vence-API},
  abstract = {We have settled on a naming scheme for columns in the data returned by the API, but there are more improvements we would like to make before releasing a stable version. We are also looking for more users to test this API against their database to find any potential problems before a stable release.},
  organization = {{University of Arizona}},
  version = {v0.1.0-beta},
  keywords = {✅,API,Application-Programming-Interface},
  file = {C:\Users\andre\Zotero\storage\2NC4TFKN\8118524.html}
}

@software{Antaya_2023b,
  title = {R Scripts for Processing and Analyzing Camera Trap Photos and Vegetation Data from Grazing Studies.},
  author = {Antaya, Andrew},
  date = {2023-06-05},
  origdate = {2019-04-08T16:41:38Z},
  url = {https://github.com/amantaya/grazing-interaction},
  abstract = {R, Perl, and Bulk Rename Command Line scripts for processing and analyzing camera trap photos and vegetation data from grazing studies.},
  keywords = {✅,R}
}

@unpublished{Antaya_2023d,
  type = {Workshop},
  title = {Invited {{Speaker Virtual Fence Data Workshop}}},
  author = {Antaya, Andrew M.},
  date = {2023-02-12},
  eventtitle = {Virtual {{Fence In-Service Conference}}},
  venue = {{Boise, Idaho, USA}},
  keywords = {✅,📎}
}

@software{Antaya_Brennan_2023,
  title = {Python {{API}} to Retrieve Data from {{Vence Corp}}. Virtual Fence Collars.},
  shorttitle = {Amantaya/{{Vence-API}}},
  author = {Antaya, Andrew and Brennan, Jameson R.},
  date = {2023-10-18},
  url = {https://github.com/amantaya/Vence-API},
  abstract = {This release supports the version 4 message protocol for the Vence collars. The output from this version of the API is no longer compatible with the output from older versions of this API.},
  organization = {{University of Arizona}},
  version = {v1.0.0},
  keywords = {✅,API,Application-Programming-Interface}
}

@software{Antaya_Brennan_2023a,
  title = {R, {{Python}}, and {{Jupyter Notebook}} Files for the {{AG2PI Workshop}}.},
  author = {Antaya, Andrew M. and Brennan, Jameson R.},
  date = {2023-08-07},
  url = {https://github.com/amantaya/vf-workshop},
  urldate = {2024-02-15},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\GM62QCL5\vf-workshop.html}
}

@unpublished{Antaya_et_al_2017,
  type = {Poster},
  title = {Using Occupancy Models to Understand the Effects of Border-Related Human Activity on Desert Bighorn Sheep ({{Ovis}} Canadensis Mexicana).},
  author = {Antaya, Andrew M. and Christianson, David and Coleman, Tyler},
  date = {2017-09-27},
  eventtitle = {The {{Wildlife Society Conference}}},
  venue = {{Albuquerque, New Mexico, USA}},
  keywords = {✅,📎}
}

@unpublished{Antaya_et_al_2019,
  type = {Conference},
  title = {Free-Roaming Horses in Montane Riparian Areas of {{Arizona}}: Examining Use of Forage Resources.},
  author = {Antaya, Andrew M. and Blum, Brett and Mayer, Brandon and Noelle, Sarah and Ruyle, George},
  date = {2019-02-13},
  eventtitle = {The {{Society}} for {{Range Management Annual Meeting}}},
  venue = {{Minneapolis, Minnesota, USA}},
  keywords = {✅,📎}
}

@report{Antaya_et_al_2020,
  type = {Submitted to U.S. Forest Service},
  title = {Examination of the {{Ecological Interactions}} of {{Free-Roaming Horses}} on {{Montane Riparian Systems}} of the {{Apache-Sitgreaves National Forest}}, {{Arizona}}, {{USA}}.},
  author = {Antaya, Andrew and Mayer, Brandon and Noelle, Sarah and Ruyle, George},
  date = {2020-01-29},
  pages = {35},
  institution = {{University of Arizona}},
  location = {{Apache-Sitgreaves National Forest}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\KGE663LA\Antaya et al_2020_Examination of the Ecological Interactions of Free-Roaming Horses on Montane.pdf}
}

@report{Antaya_et_al_2022,
  type = {Submitted to U.S. Forest Service},
  title = {Examination of {{Site Use}} by {{Grazing Animals}} and {{Effects}} on {{Vegetation}} within the {{Heber Wild Horse Territory}}, {{Arizona}}, {{USA}}.},
  author = {Antaya, Andrew and Mayer, Brandon and Noelle, Sarah and Ruyle, George},
  date = {2022-04-14},
  pages = {63},
  institution = {{University of Arizona}},
  location = {{Apache-Sitgreaves National Forest, Heber Wild Horse Territory}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\S6MP4UIV\Antaya et al. - 2022 - Examination of Site Use by Grazing Animals and Eff.pdf}
}

@unpublished{Antaya_et_al_2022a,
  type = {Webinar},
  title = {Virtual {{Fence Applications}} and {{Considerations}} for {{Public Land Managers}}},
  author = {Antaya, Andrew and Mayer, Brandon and Bluoin, Carter and Noelle, Sarah and Blum, Brett},
  editora = {Dalke, Amber and Beard, Joslyn and Lien, Aaron and Ruyle, George},
  editoratype = {collaborator},
  date = {2022-12-07},
  eventtitle = {{{USDA Geofencing Summit Webinar}}},
  venue = {{Virtual}},
  keywords = {✅,mypub,public land,virtual-fencing,virtual-fencing-technology},
  file = {C:\Users\andre\Zotero\storage\HJH6XYH7\Antaya_2022_Virtual Fence Applications and Considerations for Public Land Managers.pdf}
}

@unpublished{Antaya_et_al_2022b,
  type = {Meeting},
  title = {Heber {{Wild Horse Territory}}: {{Examining Use}} of {{Forage Resources}}},
  author = {Antaya, Andrew and Mayer, Brandon and Noelle, Sarah and Bluoin, Carter and Ruyle, George},
  date = {2022-04-21},
  eventtitle = {Ranching {{Heritage Alliance}}},
  venue = {{X Diamond Ranch, Eager, Arizona, USA}},
  keywords = {✅,📎}
}

@unpublished{Antaya_et_al_2022c,
  type = {Webinar},
  title = {Virtual {{Fence Applications}} and {{Considerations}} for {{Public Land Managers}}},
  author = {Antaya, Andrew and Mayer, Brandon and Bluoin, Carter and Noelle, Sarah and Blum, Brett},
  editora = {Dalke, Amber and Beard, Joslyn and Lien, Aaron and Ruyle, George},
  editoratype = {collaborator},
  date = {2022-12-06},
  eventtitle = {Kaibab {{National Forest Range Management Staff}}},
  venue = {{Virtual}},
  keywords = {✅,mypub,public land,virtual-fencing,virtual-fencing-technology},
  file = {C:\Users\andre\Zotero\storage\F3GJLR9W\Antaya_2022_Virtual Fence Applications and Considerations for Public Land Managers.pdf}
}

@unpublished{Antaya_et_al_2023,
  type = {Conference},
  title = {Evaluating {{Virtual Fence Technology}} to {{Improve Rangeland Condition}}, {{Enhance Animal Management}}, and {{Assess Economic Feasibility}}},
  author = {Antaya, Andrew M. and Mayer, Brandon and Dalke, Amber and Blouin, Carter and Noelle, Sarah and Blum, Brett and Justiniani, Hector Elias and Lien, Aaron and Beard, Joslyn and Soto, Jose and Ruyle, George},
  date = {2023-10-21},
  eventtitle = {Research {{Insights}} in {{Semi-Arid Ecosystems}}},
  venue = {{University of Arizona, Tucson, Arizona, USA}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\38C34TPL\Antaya et al_2023_Evaluating Virtual Fence Technology to Improve Rangeland Condition, Enhance.pdf}
}

@unpublished{Antaya_et_al_2023a,
  type = {Poster},
  title = {Evaluating {{Virtual Fence Technology}} to {{Improve Rangeland Condition}}, {{Enhance Animal Management}}, and {{Assess Economic Feasibility}}},
  author = {Antaya, Andrew M. and Mayer, Brandon and Blouin, Carter and Noelle, Sarah and Blum, Brett and {Aaron Lien} and {Joslyn Beard} and {Jose Soto} and {Amber Dalke} and {Hector Elias Justiniani} and {George Ruyle}},
  date = {2023-03-30},
  eventtitle = {Agriculture, {{Life}} and {{Veterinary Sciences}}, and {{Cooperative Extension Research Poster Forum}}},
  venue = {{University of Arizona, Tucson, Arizona}},
  keywords = {✅,📎}
}

@unpublished{Antaya_et_al_2023b,
  type = {Meeting},
  title = {Virtual {{Fence Applications}} on the {{Santa Rita Experimental Range}}},
  author = {Antaya, Andrew M. and Mayer, Brandon and Dalke, Amber and Blouin, Carter and Noelle, Sarah and Blum, Brett and Justiniani, Hector Elias and Lien, Aaron and Beard, Joslyn and Soto, Jose and Ruyle, George},
  date = {2023-08-25},
  eventtitle = {Southern {{Arizona Cattleman}}'s {{Protective Association}}},
  venue = {{Santa Rita Ranch, Green Valley, Arizona, USA}},
  keywords = {✅,📎}
}

@unpublished{Antaya_et_al_2023c,
  type = {Webinar},
  title = {From {{Raw Data Messages}} to {{Animal Energetics Models}}},
  author = {Antaya, Andrew M. and Brennan, Jameson R. and Menendez, III, Hector M},
  date = {2023-08-07},
  eventtitle = {Agriculture {{Genome}} to {{Phenome Initiative}} ({{AG2PI}}) {{Workshop}} 24},
  venue = {{Virtual}},
  keywords = {✅,📎}
}

@unpublished{Antaya_et_al_2023d,
  type = {Workshop},
  title = {Virtual {{Fence Technology}} for {{Rangeland Livestock}} – {{What}}, {{How}}, {{Why}} and {{Should}}?},
  author = {Antaya, Andrew and Mayer, Brandon and Blouin, Carter and Noelle, Sarah and Blum, Brett},
  editora = {Lien, Aaron and Beard, Joslyn K. and Soto, Jose and Justiniani, Hector Elias and Ruyle, George},
  editoratype = {collaborator},
  date = {2023-03-31},
  eventtitle = {Southeast {{Regional Range Livestock Workshop}}},
  venue = {{Wilcox, Arizona, USA}},
  keywords = {✅,📎}
}

@misc{Antaya_et_al_2024,
  title = {What Is {{Virtual Fence}}? {{Basics}} of a {{Virtual Fencing System}}},
  author = {Antaya, Andrew M. and Dalke, Amber and Mayer, Brandon and Noelle, Sarah and Beard, Joslyn and Blum, Brett and Ruyle, George and Lien, Aaron},
  date = {2024},
sortyear = {1},
  organization = {{University of Arizona Cooperative Extension}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\9HG2TNUP\Final-Edited-for-Reviewers-Comments-01.26.24 - What is Virtual Fence Basics of a Virtual Fencing System.docx}
}

@misc{Antaya_et_al_InPrep,
  title = {Foundations of {{Virtual Fencing}}: {{Strategies}} for {{Collar Management}}},
  author = {Antaya, Andrew and Dalke, Amber and Mayer, Brandon and Noelle, Sarah and Blum, Brett and Beard, Joslyn and Ruyle, George and Lien, Aaron},
  year = {In Prep},
  sortyear = {5},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\RQ6LRBES\Virtual Fence Factsheet 5 - Collar Management - Outline 02.05.24.docx}
}

@misc{Antaya_et_al_InReview,
  title = {Foundations of {{Virtual Fencing}}: {{The Vital Role}} of {{High-Quality GIS Data}}},
  author = {Antaya, Andrew M. and Dalke, Amber and Mayer, Brandon and Blum, Brett and Beard, Joslyn and Blouin, Carter and Noelle, Sarah and Ruyle, George and Lien, Aaron},
  year = {In Review},
sortyear = {2},
  organization = {{University of Arizona Cooperative Extension}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\E72F7IYS\Antaya et al. - Foundations of virtual fencing the vital role of .pdf}
}

@article{Antaya_et_al_InReviewa,
  title = {Leveraging {{Virtual Fence GPS Data}} for {{Rangeland Management}}},
  author = {Antaya, Andrew and Dalke, Amber and Mayer, Brandon and Blouin, Carter and Noelle, Sarah and Blum, Brett and Beard, Joslyn K. and Ruyle, George and Lien, Aaron},
  year = {In Review},
  journaltitle = {Rangelands},
  abstract = {Most virtual fence (VF) devices use the Global Positioning System (GPS) to locate and track the position of livestock.  VF devices transmit GPS data across the Internet to the VF software, and users can monitor the location and distribution of livestock across a pasture or grazing allotment in near real-time.  Users of VF devices should be aware of GPS error and screen for erroneous data points when interpreting data from VF devices.  Large datasets generated by VF devices and lack of standardization presents challenges for users of VF device data.  Data from VF devices can be used to address resource management concerns as they occur, rather than after, and managers can potentially use VF devices to alter livestock distribution if an undesirable grazing distribution occurs.},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\FXCB9XCC\Final 12.15.2023.docx}
}

@unpublished{Antaya_Ruyle_2020,
  type = {Conference},
  title = {Adding Value to Range Rider Programs through Low-Cost, Scalable Citizen Science.},
  author = {Antaya, Andrew M. and Ruyle, George},
  date = {2020-01-21},
  eventtitle = {Winter {{Meeting}} of the {{Arizona Section Society}} for {{Range Management}}},
  venue = {{Wickenburg, Arizona, USA}},
  keywords = {✅,📎}
}

@unpublished{Antaya_Ruyle_2020a,
  type = {Conference},
  title = {Range Riders as Citizen Scientists},
  author = {Antaya, Andrew M. and Ruyle, George},
  date = {2020-09-24},
  eventtitle = {Summer {{Meeting}} of the {{Arizona Section Society}} for {{Range Management}}},
  venue = {{Virtual}},
  keywords = {✅,📎}
}

@report{Blum_et_al_2019,
  type = {Submitted to U.S. Forest Service},
  title = {Examination of {{Behavioral Variation}}, {{Site Use}} and {{Interspecies Interaction}} in the {{Heber Wild Horse Territory}}, {{Arizona}}, {{USA}}.},
  author = {Blum, Brett and Noelle, Sarah and Mayer, Brandon and Antaya, Andrew and Ruyle, George},
  date = {2019-07-10},
  pages = {30},
  institution = {{University of Arizona}},
  location = {{Apache-Sitgreaves National Forest}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\YIXSZBY2\Blum et al. - Examination of Behavioral Variation, Site Use and .pdf}
}

@unpublished{Blum_et_al_2023,
  type = {Conference},
  title = {Applications in {{Virtual Fencing}}},
  author = {Blum, Brett and Antaya, Andrew and Mayer, Brandon and Bluoin, Carter and Noelle, Sarah},
  editora = {Dalke, Amber and Beard, Joslyn and Lien, Aaron and McClaran, Mitch and Ruyle, George},
  editoratype = {collaborator},
  date = {2023-02-06},
  eventtitle = {Arizona {{Section Society}} for {{Range Management Winter Meeting}}},
  venue = {{Maricopa Agricultural Experiment Station, Maricopa, Arizona, USA}},
  keywords = {✅,📎,mypub,public land,virtual-fencing,virtual-fencing-technology}
}

@unpublished{Mayer_et_al_2022,
  type = {Conference},
  title = {Reflections on {{Virtual Fencing}}: {{Refining}} a {{Revolution}} in {{Rangelands}}.},
  author = {Mayer, Brandon and Antaya, Andrew M. and Dalke, Amber and Blouin, Carter and Noelle, Sarah and Blum, Brett and Justiniani, Hector Elias and Lien, Aaron and Beard, Joslyn and Soto, Jose and Ruyle, George},
  date = {2022-11-05},
  eventtitle = {Research {{Insights}} in {{Semi-Arid Ecosystems}}},
  venue = {{University of Arizona, Tucson, Arizona, USA}},
  keywords = {✅,📎}
}

@unpublished{Mayer_et_al_2023,
  type = {Workshop},
  title = {Virtual {{Fence Technology}} for {{Rangeland Livestock}} – {{What}}, {{How}}, {{Why}} and {{Should}}?},
  author = {Mayer, Brandon and Antaya, Andrew and Blouin, Carter and Noelle, Sarah and Blum, Brett},
  editora = {Lien, Aaron and Beard, Joslyn K. and Soto, Jose and Justiniani, Hector Elias and Ruyle, George},
  editoratype = {collaborator},
  date = {2023-04-13},
  eventtitle = {Northeast {{Regional Range Livestock Workshop}}},
  venue = {{Holbrook, Arizona, USA}},
  keywords = {✅,📎}
}

@misc{Mayer_et_al_InPrep,
  title = {Foundations of {{Virtual Fencing}}: {{Create}} the {{Conditions}} for {{Virtual Fence Success}}},
  author = {Mayer, Brandon and Dalke, Amber and Antaya, Andrew and Noelle, Sarah and Beard, Joslyn and Ruyle, George and Lien, Aaron},
  year = {In Prep},
sortyear = {4},
  organization = {{University of Arizona Cooperative Extension}},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\HPZMFPW9\Common Problems and Troubleshooting 02_08_2024.docx}
}

@misc{Mayer_et_al_InReview,
  title = {Livestock and {{Virtual Fencing}}: {{Foundations}} of {{Conditioning}} for {{Animal Welfare}}},
  author = {Mayer, Brandon and Dalke, Amber and Antaya, Andrew and Beard, Joslyn and Noelle, Sarah and Lien, Aaron},
  year = {In Review},
sortyear = {3},
  langid = {english},
  organization = {{University of Arizona Cooperative Extension}},
  keywords = {✅,animal-conditioning,livestock,virtual-fence},
  file = {C:\Users\andre\Zotero\storage\T9EMZZMK\Mayer et al. - Livestock and Virtual Fencing Foundations of Cond.pdf}
}

@article{Mayer_et_al_InReviewa,
  title = {Using {{Virtual Fence}} to {{Manage Livestock}} in {{Semiarid Ecosystems}}},
  author = {Mayer, Brandon and Dalke, Amber and Antaya, Andrew and Noelle, Sarah and Blum, Brett and Blouin, Carter and Ruyle, George and Beard, Joslyn K. and Lien, Aaron},
  year = {In Review},
  journaltitle = {Rangelands},
  keywords = {✅},
  file = {C:\Users\andre\Zotero\storage\ESQY2ZB7\VF in Desert Southwest Final.docx}
}

@software{McMullen_Antaya_2023,
  title = {{{ArcPy}} ({{Jupyter}}) {{Notebook}} to Find the Optimal Location for Virtual Fence Base Stations v.0.1.0-Alpha.},
  author = {McMullen, Lily and Antaya, Andrew},
  date = {2023-07-05},
  doi = {10.5281/zenodo.8118534},
  url = {https://github.com/lilymcmullen/OptimalVisibilityTool},
  abstract = {ArcPy script (requires ArcGIS Pro) to find the points within a specified area which have the best visibility analysis. Used for finding points for base stations with the most coverage on a range, specifically for virtual fencing.},
  version = {0.1.0-alpha},
  keywords = {✅,base station,GitHub,Python,virtual-fence,virtual-fencing}
}

@unpublished{Noelle_et_al_2023,
  type = {Meeting},
  title = {Reflections on {{Virtual Fencing}}: {{Refining}} a {{Revolution}} in {{Rangelands}}},
  author = {Noelle, Sarah and Bluoin, Carter and Mayer, Brandon and Antaya, Andrew and Ruyle, George},
  date = {2023-02-11},
  eventtitle = {Virtual {{Fence In-Service Conference}}},
  venue = {{Boise, Idaho, USA}},
  keywords = {✅,📎}
}