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<a href="_post_processor_8cc.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* SPDX-FileCopyrightText: Copyright (c) 2016 - 2024, the adamantine authors.</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  </div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include <<a class="code" href="_post_processor_8hh.html">PostProcessor.hh</a>></span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include <<a class="code" href="instantiation_8hh.html">instantiation.hh</a>></span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span>  </div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include <deal.II/base/symmetric_tensor.h></span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include <deal.II/dofs/dof_handler.h></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include <deal.II/grid/filtered_iterator.h></span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include <deal.II/numerics/data_component_interpretation.h></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span>  </div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <fstream></span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <unordered_map></span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>  </div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="keyword">namespace </span><a class="code" href="namespaceadamantine.html">adamantine</a></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> {</div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00019"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#af248ac0a20675dd3fe4ce3ec427d74c0"> 19</a></span> <a class="code" href="classadamantine_1_1_post_processor.html#af248ac0a20675dd3fe4ce3ec427d74c0">PostProcessor<dim>::PostProcessor</a>(MPI_Comm <span class="keyword">const</span> &communicator,</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  boost::property_tree::ptree <span class="keyword">const</span> &database,</div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  dealii::DoFHandler<dim> &dof_handler,</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="keywordtype">int</span> ensemble_member_index)</div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  : _communicator(communicator)</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> {</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="comment">// This is internal data we embed in the database that is intended to be set</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="comment">// in the application (not by the user in the input file)</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">_thermal_output</a> = database.get(<span class="stringliteral">"thermal_output"</span>, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <a class="code" href="classadamantine_1_1_post_processor.html#ac3dde08baf6fbf5333fbb4f22c488727">_mechanical_output</a> = database.get(<span class="stringliteral">"mechanical_output"</span>, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <a class="code" href="utils_8hh.html#aa06eedd6f738a415870e97a375337d51">ASSERT</a>(<a class="code" href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">_thermal_output</a> != <a class="code" href="classadamantine_1_1_post_processor.html#ac3dde08baf6fbf5333fbb4f22c488727">_mechanical_output</a>, <span class="stringliteral">"Internal error"</span>);</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keywordflow">if</span> (<a class="code" href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">_thermal_output</a>)</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  {</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <a class="code" href="classadamantine_1_1_post_processor.html#add2c3f80a35e91440e545f985cfc2098">_thermal_dof_handler</a> = &dof_handler;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  }</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  {</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a8c52075e1b293787810b39b79c033605">_mechanical_dof_handler</a> = &dof_handler;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  }</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="comment">// PropertyTreeInput post_processor.file_name</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> = database.get<std::string>(<span class="stringliteral">"filename_prefix"</span>);</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keywordflow">if</span> (ensemble_member_index >= 0)</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  {</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> =</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> + <span class="stringliteral">"_m"</span> + std::to_string(ensemble_member_index);</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  }</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="comment">// PropertyTreeInput post_processor.additional_output_refinement</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a4615aa0c1a453db877235d48c2d2aeb5">_additional_output_refinement</a> =</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  database.get<<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>>(<span class="stringliteral">"additional_output_refinement"</span>, 0);</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> }</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#a95c787fba64cac0a279e722f00eeba22"> 53</a></span> <a class="code" href="classadamantine_1_1_post_processor.html#af248ac0a20675dd3fe4ce3ec427d74c0">PostProcessor<dim>::PostProcessor</a>(</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  MPI_Comm <span class="keyword">const</span> &communicator, boost::property_tree::ptree <span class="keyword">const</span> &database,</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  dealii::DoFHandler<dim> &thermal_dof_handler,</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  dealii::DoFHandler<dim> &mechanical_dof_handler, <span class="keywordtype">int</span> ensemble_member_index)</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  : _communicator(communicator)</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> {</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">_thermal_output</a> = database.get(<span class="stringliteral">"thermal_output"</span>, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <a class="code" href="classadamantine_1_1_post_processor.html#ac3dde08baf6fbf5333fbb4f22c488727">_mechanical_output</a> = database.get(<span class="stringliteral">"mechanical_output"</span>, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <a class="code" href="utils_8hh.html#aa06eedd6f738a415870e97a375337d51">ASSERT</a>(<a class="code" href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">_thermal_output</a>, <span class="stringliteral">"Internal error"</span>);</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <a class="code" href="utils_8hh.html#aa06eedd6f738a415870e97a375337d51">ASSERT</a>(<a class="code" href="classadamantine_1_1_post_processor.html#ac3dde08baf6fbf5333fbb4f22c488727">_mechanical_output</a>, <span class="stringliteral">"Internal error"</span>);</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <a class="code" href="classadamantine_1_1_post_processor.html#add2c3f80a35e91440e545f985cfc2098">_thermal_dof_handler</a> = &thermal_dof_handler;</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a8c52075e1b293787810b39b79c033605">_mechanical_dof_handler</a> = &mechanical_dof_handler;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  </div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="comment">// PropertyTreeInput post_processor.filename_prefix</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> = database.get<std::string>(<span class="stringliteral">"filename_prefix"</span>);</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keywordflow">if</span> (ensemble_member_index >= 0)</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  {</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> =</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <a class="code" href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">_filename_prefix</a> + <span class="stringliteral">"_m"</span> + std::to_string(ensemble_member_index);</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  }</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="comment">// PropertyTreeInput post_processor.additional_output_refinement</span></div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <a class="code" href="classadamantine_1_1_post_processor.html#a4615aa0c1a453db877235d48c2d2aeb5">_additional_output_refinement</a> =</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  database.get<<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>>(<span class="stringliteral">"additional_output_refinement"</span>, 0);</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> }</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  </div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#afc24cebf3b7d76f618ec475b5a701a62"> 80</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_post_processor.html#afc24cebf3b7d76f618ec475b5a701a62">PostProcessor<dim>::write_pvd</a>()<span class="keyword"> const</span></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="keyword"></span>{</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> rank = dealii::Utilities::MPI::this_mpi_process(_communicator);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keywordflow">if</span> (rank == 0)</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  std::ofstream <a class="code" href="namespaceadamantine.html#a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8">output</a>(_filename_prefix + <span class="stringliteral">".pvd"</span>);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  dealii::DataOutBase::write_pvd_record(<a class="code" href="namespaceadamantine.html#a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8">output</a>, _times_filenames);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  }</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> }</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  </div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#acab9c2212e61b34707a195a81de8818b"> 91</a></span> dealii::Vector<double> <a class="code" href="classadamantine_1_1_post_processor.html#acab9c2212e61b34707a195a81de8818b">PostProcessor<dim>::get_stress_norm</a>(</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  std::vector<std::vector<dealii::SymmetricTensor<2, dim>>> <span class="keyword">const</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  &stress_tensor)</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> {</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  dealii::Vector<double> norm(</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  _mechanical_dof_handler->get_triangulation().n_active_cells());</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_quad_pts =</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  stress_tensor.size() > 0 ? stress_tensor[0].size() : 0;</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_id = 0;</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _mechanical_dof_handler->active_cell_iterators() |</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  dealii::IteratorFilters::ActiveFEIndexEqualTo(</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  0, <span class="comment">/* locally owned */</span> <span class="keyword">true</span>))</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  {</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  dealii::SymmetricTensor<2, dim> accumulated_stress;</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> q = 0; q < n_quad_pts; ++q)</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  {</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  accumulated_stress += stress_tensor[cell_id][q];</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  }</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  norm(cell->active_cell_index()) = (accumulated_stress / n_quad_pts).norm();</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  ++cell_id;</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  }</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  </div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keywordflow">return</span> norm;</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> }</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  </div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00119"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#a368c50fd88dccf77a410279f9b3da6c3"> 119</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_post_processor.html#a368c50fd88dccf77a410279f9b3da6c3">PostProcessor<dim>::thermal_dataout</a>(</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  dealii::LA::distributed::Vector<double> <span class="keyword">const</span> &temperature)</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> {</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  temperature.update_ghost_values();</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  _data_out.add_data_vector(*_thermal_dof_handler, temperature, <span class="stringliteral">"temperature"</span>);</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  </div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#a03b4c730c52eb9b4517287cec02c1621"> 127</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_post_processor.html#a03b4c730c52eb9b4517287cec02c1621">PostProcessor<dim>::mechanical_dataout</a>(</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  dealii::LA::distributed::Vector<double> <span class="keyword">const</span> &displacement,</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <a class="code" href="classadamantine_1_1_strain_post_processor.html">StrainPostProcessor<dim></a> <span class="keyword">const</span> &strain,</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  std::vector<std::vector<dealii::SymmetricTensor<2, dim>>> <span class="keyword">const</span></div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  &stress_tensor)</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> {</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="comment">// Add the displacement to the output</span></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  displacement.update_ghost_values();</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  std::vector<std::string> displacement_names(dim, <span class="stringliteral">"displacement"</span>);</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  std::vector<dealii::DataComponentInterpretation::DataComponentInterpretation></div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  displacement_data_component_interpretation(</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  dim,</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  dealii::DataComponentInterpretation::component_is_part_of_vector);</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  _data_out.add_data_vector(*_mechanical_dof_handler, displacement,</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  displacement_names,</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  displacement_data_component_interpretation);</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  </div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="comment">// Add the strain tensor to the output</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  _data_out.add_data_vector(*_mechanical_dof_handler, displacement, strain);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  </div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="comment">// Add the stress tensor</span></div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  dealii::Vector<double> stress_norm = get_stress_norm(stress_tensor);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  _data_out.add_data_vector(stress_norm, <span class="stringliteral">"stress"</span>);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> }</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  </div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#a5d921e0ce3c63bb03dff427c3c61fdff"> 153</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_post_processor.html#a5d921e0ce3c63bb03dff427c3c61fdff">PostProcessor<dim>::subdomain_dataout</a>()</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> {</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  dealii::DoFHandler<dim> *dof_handler =</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  (_thermal_dof_handler) ? _thermal_dof_handler : _mechanical_dof_handler;</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_active_cells =</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  dof_handler->get_triangulation().n_active_cells();</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  dealii::types::subdomain_id subdomain_id =</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  dof_handler->get_triangulation().locally_owned_subdomain();</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  dealii::Vector<float> subdomain(n_active_cells);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < subdomain.size(); ++i)</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  subdomain[i] = subdomain_id;</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  _data_out.add_data_vector(subdomain, <span class="stringliteral">"subdomain"</span>);</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> }</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  </div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim></div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="classadamantine_1_1_post_processor.html#a3655abed02780f1e039f6352bcee716f"> 168</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_post_processor.html#a3655abed02780f1e039f6352bcee716f">PostProcessor<dim>::write_pvtu</a>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> time_step, <span class="keywordtype">double</span> time)</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> {</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  dealii::DoFHandler<dim> *dof_handler =</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  (_thermal_dof_handler) ? _thermal_dof_handler : _mechanical_dof_handler;</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  dealii::types::subdomain_id subdomain_id =</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  dof_handler->get_triangulation().locally_owned_subdomain();</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  _data_out.build_patches(_additional_output_refinement);</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  std::string local_filename = _filename_prefix + <span class="stringliteral">"."</span> +</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  dealii::Utilities::to_string(time_step) + <span class="stringliteral">"."</span> +</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  dealii::Utilities::to_string(subdomain_id);</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  std::ofstream <a class="code" href="namespaceadamantine.html#a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8">output</a>((local_filename + <span class="stringliteral">".vtu"</span>).c_str());</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  dealii::DataOutBase::VtkFlags flags(time);</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  _data_out.set_flags(flags);</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  _data_out.write_vtu(<a class="code" href="namespaceadamantine.html#a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8">output</a>);</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  </div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> rank = dealii::Utilities::MPI::this_mpi_process(_communicator);</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="keywordflow">if</span> (rank == 0)</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  {</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  std::vector<std::string> filenames;</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> comm_size =</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  dealii::Utilities::MPI::n_mpi_processes(_communicator);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < comm_size; ++i)</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  {</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  std::string local_name = _filename_prefix + <span class="stringliteral">"."</span> +</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  dealii::Utilities::to_string(time_step) + <span class="stringliteral">"."</span> +</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  dealii::Utilities::to_string(i) + <span class="stringliteral">".vtu"</span>;</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  filenames.push_back(local_name);</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  }</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  std::string pvtu_filename = _filename_prefix + <span class="stringliteral">"."</span> +</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  dealii::Utilities::to_string(time_step) +</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <span class="stringliteral">".pvtu"</span>;</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  std::ofstream pvtu_output(pvtu_filename.c_str());</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  _data_out.write_pvtu_record(pvtu_output, filenames);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  </div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="comment">// Associate the time to the time step.</span></div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  _times_filenames.push_back(</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  std::pair<double, std::string>(time, pvtu_filename));</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  }</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> }</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> } <span class="comment">// namespace adamantine</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  </div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> <a class="code" href="_point_cloud_8cc.html#ae2031223b2864e2d619d8e1fc2fd8ff6">INSTANTIATE_DIM</a>(PostProcessor)</div>
<div class="ttc" id="a_point_cloud_8cc_html_ae2031223b2864e2d619d8e1fc2fd8ff6"><div class="ttname"><a href="_point_cloud_8cc.html#ae2031223b2864e2d619d8e1fc2fd8ff6">INSTANTIATE_DIM</a></div><div class="ttdeci">INSTANTIATE_DIM(PointCloud)</div></div>
<div class="ttc" id="a_post_processor_8hh_html"><div class="ttname"><a href="_post_processor_8hh.html">PostProcessor.hh</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a03b4c730c52eb9b4517287cec02c1621"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a03b4c730c52eb9b4517287cec02c1621">adamantine::PostProcessor::mechanical_dataout</a></div><div class="ttdeci">void mechanical_dataout(dealii::LA::distributed::Vector< double > const &displacement, StrainPostProcessor< dim > const &strain, std::vector< std::vector< dealii::SymmetricTensor< 2, dim >>> const &stress_tensor)</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00127">PostProcessor.cc:127</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a3655abed02780f1e039f6352bcee716f"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a3655abed02780f1e039f6352bcee716f">adamantine::PostProcessor::write_pvtu</a></div><div class="ttdeci">void write_pvtu(unsigned int time_step, double time)</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00168">PostProcessor.cc:168</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a368c50fd88dccf77a410279f9b3da6c3"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a368c50fd88dccf77a410279f9b3da6c3">adamantine::PostProcessor::thermal_dataout</a></div><div class="ttdeci">void thermal_dataout(dealii::LA::distributed::Vector< double > const &temperature)</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00119">PostProcessor.cc:119</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a4615aa0c1a453db877235d48c2d2aeb5"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a4615aa0c1a453db877235d48c2d2aeb5">adamantine::PostProcessor::_additional_output_refinement</a></div><div class="ttdeci">unsigned int _additional_output_refinement</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00183">PostProcessor.hh:183</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a4eb095b828fc940138a9b7658dd6d2f1"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a4eb095b828fc940138a9b7658dd6d2f1">adamantine::PostProcessor::_thermal_output</a></div><div class="ttdeci">bool _thermal_output</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00155">PostProcessor.hh:155</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a5d921e0ce3c63bb03dff427c3c61fdff"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a5d921e0ce3c63bb03dff427c3c61fdff">adamantine::PostProcessor::subdomain_dataout</a></div><div class="ttdeci">void subdomain_dataout()</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00153">PostProcessor.cc:153</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_a8c52075e1b293787810b39b79c033605"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#a8c52075e1b293787810b39b79c033605">adamantine::PostProcessor::_mechanical_dof_handler</a></div><div class="ttdeci">dealii::DoFHandler< dim > * _mechanical_dof_handler</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00179">PostProcessor.hh:179</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_aaaa57bb855f84836d2567caec74cdf11"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#aaaa57bb855f84836d2567caec74cdf11">adamantine::PostProcessor::_filename_prefix</a></div><div class="ttdeci">std::string _filename_prefix</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00163">PostProcessor.hh:163</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_ac3dde08baf6fbf5333fbb4f22c488727"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#ac3dde08baf6fbf5333fbb4f22c488727">adamantine::PostProcessor::_mechanical_output</a></div><div class="ttdeci">bool _mechanical_output</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00159">PostProcessor.hh:159</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_acab9c2212e61b34707a195a81de8818b"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#acab9c2212e61b34707a195a81de8818b">adamantine::PostProcessor::get_stress_norm</a></div><div class="ttdeci">dealii::Vector< double > get_stress_norm(std::vector< std::vector< dealii::SymmetricTensor< 2, dim >>> const &stress_tensor)</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00091">PostProcessor.cc:91</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_add2c3f80a35e91440e545f985cfc2098"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#add2c3f80a35e91440e545f985cfc2098">adamantine::PostProcessor::_thermal_dof_handler</a></div><div class="ttdeci">dealii::DoFHandler< dim > * _thermal_dof_handler</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00175">PostProcessor.hh:175</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_af248ac0a20675dd3fe4ce3ec427d74c0"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#af248ac0a20675dd3fe4ce3ec427d74c0">adamantine::PostProcessor::PostProcessor</a></div><div class="ttdeci">PostProcessor(MPI_Comm const &communicator, boost::property_tree::ptree const &database, dealii::DoFHandler< dim > &dof_handler, int ensemble_member_index=-1)</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00019">PostProcessor.cc:19</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_post_processor_html_afc24cebf3b7d76f618ec475b5a701a62"><div class="ttname"><a href="classadamantine_1_1_post_processor.html#afc24cebf3b7d76f618ec475b5a701a62">adamantine::PostProcessor::write_pvd</a></div><div class="ttdeci">void write_pvd() const</div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8cc_source.html#l00080">PostProcessor.cc:80</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_strain_post_processor_html"><div class="ttname"><a href="classadamantine_1_1_strain_post_processor.html">adamantine::StrainPostProcessor</a></div><div class="ttdef"><b>Definition:</b> <a href="_post_processor_8hh_source.html#l00026">PostProcessor.hh:27</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html"><div class="ttname"><a href="instantiation_8hh.html">instantiation.hh</a></div></div>
<div class="ttc" id="anamespaceadamantine_html"><div class="ttname"><a href="namespaceadamantine.html">adamantine</a></div><div class="ttdef"><b>Definition:</b> <a href="_beam_heat_source_properties_8hh_source.html#l00014">BeamHeatSourceProperties.hh:15</a></div></div>
<div class="ttc" id="anamespaceadamantine_html_a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8"><div class="ttname"><a href="namespaceadamantine.html#a7caf29199baef249d0ee5ff6fd81006ba1691b6ec67855c130469a858d0ad41a8">adamantine::output</a></div><div class="ttdeci">@ output</div><div class="ttdef"><b>Definition:</b> <a href="types_8hh_source.html#l00147">types.hh:147</a></div></div>
<div class="ttc" id="autils_8hh_html_aa06eedd6f738a415870e97a375337d51"><div class="ttname"><a href="utils_8hh.html#aa06eedd6f738a415870e97a375337d51">ASSERT</a></div><div class="ttdeci">#define ASSERT(condition, message)</div><div class="ttdef"><b>Definition:</b> <a href="utils_8hh_source.html#l00068">utils.hh:68</a></div></div>
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