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<a href="_mechanical_physics_8cc.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* SPDX-FileCopyrightText: Copyright (c) 2022 - 2024, the adamantine authors.</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  </div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include <<a class="code" href="_mechanical_physics_8hh.html">MechanicalPhysics.hh</a>></span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include <<a class="code" href="instantiation_8hh.html">instantiation.hh</a>></span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span>  </div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include <deal.II/base/symmetric_tensor.h></span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include <deal.II/base/tensor.h></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include <deal.II/dofs/dof_tools.h></span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include <deal.II/fe/fe_nothing.h></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include <deal.II/fe/fe_q.h></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <deal.II/hp/fe_values.h></span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <deal.II/lac/la_parallel_vector.h></span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include <deal.II/lac/solver_cg.h></span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <deal.II/lac/trilinos_precondition.h></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include <deal.II/numerics/vector_tools.h></span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span>  </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">namespace </span><a class="code" href="namespaceadamantine.html">adamantine</a></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> {</div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#acf3ddacb19d46a0a8c73e7160a757ee3"> 23</a></span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#acf3ddacb19d46a0a8c73e7160a757ee3">MechanicalPhysics<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#acf3ddacb19d46a0a8c73e7160a757ee3"> MechanicalPhysics</a>(MPI_Comm <span class="keyword">const</span> &communicator,</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> fe_degree, <a class="code" href="classadamantine_1_1_geometry.html">Geometry<dim></a> &geometry,</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <a class="code" href="classadamantine_1_1_material_property.html">MaterialProperty</a><dim, p_order, MaterialStates,</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  MemorySpaceType> &material_properties,</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  std::vector<double> <span class="keyword">const</span> &reference_temperatures)</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  : _geometry(geometry), _material_properties(material_properties),</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  _dof_handler(_geometry.get_triangulation()),</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  _solution_transfer(_dof_handler),</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  _cell_data_transfer(</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  dynamic_cast<const <a class="code" href="namespacedealii.html">dealii</a>::parallel::distributed::Triangulation<dim></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  &>(_dof_handler.get_triangulation()))</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> {</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="comment">// Create the FECollection</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a34b15e3e7c17411215184e29d7dbc310">_fe_collection</a>.push_back(</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  dealii::FESystem<dim>(dealii::FE_Q<dim>(fe_degree) ^ dim));</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a34b15e3e7c17411215184e29d7dbc310">_fe_collection</a>.push_back(</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  dealii::FESystem<dim>(dealii::FE_Nothing<dim>() ^ dim));</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="comment">// Create the QCollection</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a13141333b51a3bf42c61c7b363074191">_q_collection</a>.push_back(dealii::QGauss<dim>(fe_degree + 1));</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a13141333b51a3bf42c61c7b363074191">_q_collection</a>.push_back(dealii::QGauss<dim>(1));</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">// Solve the mechanical problem only on the part of the domain that has solid</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="comment">// material.</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> n_active_cells =</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#aa1013963fdc577e7f3b10a35ef942da5">_dof_handler</a>.get_triangulation().n_active_cells();</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell :</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  dealii::filter_iterators(<a class="code" href="classadamantine_1_1_mechanical_physics.html#aa1013963fdc577e7f3b10a35ef942da5">_dof_handler</a>.active_cell_iterators(),</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  dealii::IteratorFilters::LocallyOwnedCell()))</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keywordflow">if</span> (<a class="code" href="classadamantine_1_1_mechanical_physics.html#afdc351b622a883de67c103ad0386c224">_material_properties</a>.get_state_ratio(</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  cell, MaterialStates::State::solid) > 0.99)</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  {</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  cell->set_active_fe_index(0);</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  }</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  {</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  cell->set_active_fe_index(1);</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  }</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  }</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  </div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="comment">// Create the mechanical operator</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a4d2b92b917d9afb509de50ce5b95a5a1">_mechanical_operator</a> = std::make_unique<</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <a class="code" href="classadamantine_1_1_mechanical_operator.html">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType></a>>(</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  communicator, <a class="code" href="classadamantine_1_1_mechanical_physics.html#afdc351b622a883de67c103ad0386c224">_material_properties</a>, reference_temperatures);</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  </div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="comment">// Create the data used to compute the stress tensor</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_quad_pts = <a class="code" href="classadamantine_1_1_mechanical_physics.html#a13141333b51a3bf42c61c7b363074191">_q_collection</a>.max_n_quadrature_points();</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#aa38b3b788fa8c7208a15d12e04c465c3">_plastic_internal_variable</a>.reserve(n_active_cells);</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : <a class="code" href="classadamantine_1_1_mechanical_physics.html#aa1013963fdc577e7f3b10a35ef942da5">_dof_handler</a>.active_cell_iterators())</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  {</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  {</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">auto</span> <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">elastic_limit</a> = <a class="code" href="classadamantine_1_1_mechanical_physics.html#afdc351b622a883de67c103ad0386c224">_material_properties</a>.get_mechanical_property(</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">StateProperty::elastic_limit</a>);</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#aa38b3b788fa8c7208a15d12e04c465c3">_plastic_internal_variable</a>.emplace_back(</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  std::vector<double>(n_quad_pts, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">elastic_limit</a>));</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  }</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#aa38b3b788fa8c7208a15d12e04c465c3">_plastic_internal_variable</a>.emplace_back(std::vector<double>(</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  n_quad_pts, std::numeric_limits<double>::signaling_NaN()));</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  }</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  }</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#affafa8024cbf455855f1d1d5e14aeeae">_stress</a>.resize(n_active_cells,</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <a class="code" href="classadamantine_1_1_mechanical_physics.html#a85b7f1c7e2f77d9c020e1b19174b69cb">_back_stress</a>.resize(n_active_cells,</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> }</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760"> 97</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760">MechanicalPhysics<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760"> setup_dofs</a>(std::vector<std::shared_ptr<<a class="code" href="structadamantine_1_1_body_force.html">BodyForce<dim></a>>> <span class="keyword">const</span> &body_forces)</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> {</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  _dof_handler.distribute_dofs(_fe_collection);</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  dealii::IndexSet locally_relevant_dofs;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  dealii::DoFTools::extract_locally_relevant_dofs(_dof_handler,</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  locally_relevant_dofs);</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  _affine_constraints.clear();</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  _affine_constraints.reinit(locally_relevant_dofs);</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  dealii::DoFTools::make_hanging_node_constraints(_dof_handler,</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  _affine_constraints);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  <span class="comment">// FIXME For now this is only a Dirichlet boundary condition. It is also</span></div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="comment">// manually set to be what is the bottom face for a dealii hyper-rectangle. We</span></div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="comment">// need to decide how we want to expose BC control to the user more generally</span></div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="comment">// (including for user-supplied meshes).</span></div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  dealii::VectorTools::interpolate_boundary_values(</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  _dof_handler, 4, dealii::Functions::ZeroFunction<dim>(dim),</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  _affine_constraints);</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  _affine_constraints.close();</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  </div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  _mechanical_operator->reinit(_dof_handler, _affine_constraints, _q_collection,</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  body_forces);</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> }</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  </div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html">MechanicalPhysics</a><dim, p_order, MaterialStates,</div>
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#aea69fd6fed96329d82e4c920dbb40291"> 124</a></span>  MemorySpaceType>::prepare_transfer_mpi()</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> {</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  _old_displacement.update_ghost_values();</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  _solution_transfer.prepare_for_coarsening_and_refinement(_old_displacement);</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  </div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  _data_to_transfer.clear();</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_quad_pts = _q_collection.max_n_quadrature_points();</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad_plastic = 1;</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad_stress =</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  dealii::SymmetricTensor<2, dim>::n_independent_components;</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  </div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad =</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  n_doubles_per_quad_plastic + n_doubles_per_quad_stress * 2;</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  std::vector<double> dummy_cell_data(n_quad_pts * n_doubles_per_quad,</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  std::numeric_limits<double>::infinity());</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  </div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_id = 0;</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  {</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  {</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  std::vector<double> cell_data(n_quad_pts * n_doubles_per_quad);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> stress_offset =</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  n_quad_pts * n_doubles_per_quad_plastic;</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> back_stress_offset =</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  n_quad_pts * (n_doubles_per_quad_plastic + n_doubles_per_quad_stress);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  </div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  std::copy(_plastic_internal_variable[cell_id].begin(),</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  _plastic_internal_variable[cell_id].end(), cell_data.begin());</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> quad = 0; quad < n_quad_pts; ++quad)</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  {</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < n_doubles_per_quad_stress; ++i)</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  {</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  cell_data[stress_offset + quad * n_doubles_per_quad_stress + i] =</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  _stress[cell_id][quad].access_raw_entry(i);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  cell_data[back_stress_offset + quad * n_doubles_per_quad_stress + i] =</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  _back_stress[cell_id][quad].access_raw_entry(i);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  }</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  }</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  _data_to_transfer.push_back(std::move(cell_data));</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  }</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  {</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  _data_to_transfer.push_back(dummy_cell_data);</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  }</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  ++cell_id;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  }</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  _cell_data_transfer.prepare_for_coarsening_and_refinement(_data_to_transfer);</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> }</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  </div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html">MechanicalPhysics</a><dim, p_order, MaterialStates,</div>
<div class="line"><a name="l00178"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#aa972c93ba081f373f8976283ce071eb4"> 178</a></span>  MemorySpaceType>::complete_transfer_mpi()</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> {</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  _dof_handler.distribute_dofs(_fe_collection);</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keyword">const</span> dealii::IndexSet locally_relevant_dofs =</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  dealii::DoFTools::extract_locally_relevant_dofs(_dof_handler);</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  _old_displacement.reinit(_dof_handler.locally_owned_dofs(),</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  locally_relevant_dofs,</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  _dof_handler.get_communicator());</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  _solution_transfer.interpolate(_old_displacement);</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  </div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keyword">auto</span> n_active_cells = _dof_handler.get_triangulation().n_active_cells();</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_quad_pts = _q_collection.max_n_quadrature_points();</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  </div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  _plastic_internal_variable.resize(n_active_cells,</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  std::vector<double>(n_quad_pts));</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  _stress.resize(n_active_cells,</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  _back_stress.resize(n_active_cells,</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad_plastic = 1;</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad_stress =</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  dealii::SymmetricTensor<2, dim>::n_independent_components;</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_doubles_per_quad =</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  n_doubles_per_quad_plastic + n_doubles_per_quad_stress * 2;</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  std::vector<std::vector<double>> data_to_unpack(</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  n_active_cells, std::vector<double>(n_doubles_per_quad * n_quad_pts));</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  _cell_data_transfer.unpack(data_to_unpack);</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  </div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_id = 0;</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  {</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  {</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> stress_offset =</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  n_quad_pts * n_doubles_per_quad_plastic;</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> back_stress_offset =</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  n_quad_pts * (n_doubles_per_quad_plastic + n_doubles_per_quad_stress);</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  </div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  std::copy(data_to_unpack[cell_id].begin(),</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  data_to_unpack[cell_id].begin() + stress_offset,</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  _plastic_internal_variable[cell_id].begin());</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> quad = 0; quad < n_quad_pts; ++quad)</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  {</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < n_doubles_per_quad_stress; ++i)</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  {</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  _stress[cell_id][quad].access_raw_entry(i) =</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  data_to_unpack[cell_id][stress_offset +</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  quad * n_doubles_per_quad_stress + i];</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  _back_stress[cell_id][quad].access_raw_entry(i) =</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  data_to_unpack[cell_id][back_stress_offset +</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  quad * n_doubles_per_quad_stress + i];</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  }</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  }</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  }</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  ++cell_id;</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> }</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00242"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#ab66c7c5b172e7f437dc450d1cc02a92b"> 242</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760">MechanicalPhysics<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760"> setup_dofs</a>(</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  dealii::DoFHandler<dim> <span class="keyword">const</span> &thermal_dof_handler,</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  &temperature,</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  std::vector<bool> <span class="keyword">const</span> &has_melted,</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  std::vector<std::shared_ptr<<a class="code" href="structadamantine_1_1_body_force.html">BodyForce<dim></a>>> <span class="keyword">const</span> &body_forces)</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span> {</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  _mechanical_operator->update_temperature(thermal_dof_handler, temperature,</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  has_melted);</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="comment">// Update the active fe indices, the plastic variables, and the displacement.</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_quad_pts = _q_collection.max_n_quadrature_points();</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_id = 0;</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  std::vector<std::vector<double>> saved_old_displacement;</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  std::vector<std::vector<double>> tmp_plastic_internal_variable;</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  std::vector<std::vector<dealii::SymmetricTensor<2, dim>>> tmp_stress;</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  std::vector<std::vector<dealii::SymmetricTensor<2, dim>>> tmp_back_stress;</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="comment">// The number of cells to activate/deactive should be small, so we can</span></div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="comment">// already reserve the memory.</span></div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_dofs_per_cell = _fe_collection.max_dofs_per_cell();</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_old_active_cells = _plastic_internal_variable.size();</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  std::vector<dealii::types::global_dof_index> global_dof_indices(</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  n_dofs_per_cell);</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  tmp_plastic_internal_variable.reserve(n_old_active_cells);</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  tmp_stress.reserve(n_old_active_cells);</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  tmp_back_stress.reserve(_back_stress.size());</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="comment">// First we save _old_displacement if it exists</span></div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="keywordflow">if</span> (_old_displacement.size())</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  {</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  _old_displacement.update_ghost_values();</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  </div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  std::vector<double> cell_values(n_dofs_per_cell);</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  saved_old_displacement.reserve(n_old_active_cells);</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  {</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keyword">auto</span> fe_index = cell->active_fe_index();</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keywordflow">if</span> (fe_index == 0)</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  {</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="comment">// The cell contains solid material, we need to save the displacement</span></div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  cell->get_dof_indices(global_dof_indices);</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < n_dofs_per_cell; ++i)</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  {</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  cell_values[i] = _old_displacement[global_dof_indices[i]];</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  }</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  }</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  {</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="comment">// The cell does not contain material or it is liquid. The</span></div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="comment">// displacement is ignored.</span></div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  cell_values.assign(n_dofs_per_cell, 0.);</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  }</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  saved_old_displacement.push_back(cell_values);</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  }</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  {</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  saved_old_displacement.push_back(std::vector<double>(n_dofs_per_cell));</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  }</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  }</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  }</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  </div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="comment">// Now we can update the fe indices and the plastic variables.</span></div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  {</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  {</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <span class="keyword">auto</span> current_fe_index = cell->active_fe_index();</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  <span class="keywordflow">if</span> (_material_properties.get_state_ratio(</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  cell, MaterialStates::State::solid) > 0.99)</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  {</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <span class="comment">// Only enable the cell if it is also enabled for the thermal simulation</span></div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="comment">// Get the thermal DoFHandler cell iterator</span></div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  dealii::DoFCellAccessor<dim, dim, false> thermal_cell(</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  &(_dof_handler.get_triangulation()), cell->level(), cell->index(),</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  &thermal_dof_handler);</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="keyword">auto</span> updated_fe_index = thermal_cell.active_fe_index();</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  <span class="keywordflow">if</span> (current_fe_index == updated_fe_index)</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  {</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="comment">// The cells is unchanged, we just copy the plastic variables as-is.</span></div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  tmp_plastic_internal_variable.push_back(</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  _plastic_internal_variable[cell_id]);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  tmp_stress.push_back(_stress[cell_id]);</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  tmp_back_stress.push_back(_back_stress[cell_id]);</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  }</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  {</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="comment">// The cell has solidified or material has been added. The new cells</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="comment">// are initialized with default values.</span></div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="keyword">auto</span> <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">elastic_limit</a> = _material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">StateProperty::elastic_limit</a>);</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  tmp_plastic_internal_variable.push_back(</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  std::vector<double>(n_quad_pts, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">elastic_limit</a>));</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  tmp_stress.push_back(</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  tmp_back_stress.push_back(</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  </div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  cell->set_active_fe_index(updated_fe_index);</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  }</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  }</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  {</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="comment">// The cell is liquid. We don't need to save the plastic variables.</span></div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  cell->set_active_fe_index(1);</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  tmp_plastic_internal_variable.push_back(std::vector<double>(</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  n_quad_pts, std::numeric_limits<double>::signaling_NaN()));</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  tmp_stress.push_back(</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  tmp_back_stress.push_back(</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  }</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  {</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  tmp_plastic_internal_variable.push_back(std::vector<double>(</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  n_quad_pts, std::numeric_limits<double>::signaling_NaN()));</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  tmp_stress.push_back(</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  tmp_back_stress.push_back(</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  std::vector<dealii::SymmetricTensor<2, dim>>(n_quad_pts));</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  ++cell_id;</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  }</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  _plastic_internal_variable.swap(tmp_plastic_internal_variable);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  _stress.swap(tmp_stress);</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  _back_stress.swap(tmp_back_stress);</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  </div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  setup_dofs(body_forces);</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  </div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <span class="comment">// Update _old_displacement if necessary</span></div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  <span class="keyword">const</span> dealii::IndexSet locally_relevant_dofs =</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  dealii::DoFTools::extract_locally_relevant_dofs(_dof_handler);</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keyword">const</span> dealii::IndexSet locally_owned_dofs = _dof_handler.locally_owned_dofs();</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  _old_displacement.reinit(locally_owned_dofs, locally_relevant_dofs,</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  _dof_handler.get_communicator());</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  </div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="keywordflow">if</span> (saved_old_displacement.size())</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  {</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  cell_id = 0;</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  {</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  <span class="keywordflow">if</span> (cell->is_locally_owned())</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  {</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  <span class="keyword">auto</span> fe_index = cell->active_fe_index();</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <span class="keywordflow">if</span> (fe_index == 0)</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  {</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  cell->get_dof_indices(global_dof_indices);</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < n_dofs_per_cell; ++i)</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  {</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordflow">if</span> (locally_owned_dofs.is_element(global_dof_indices[i]))</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  _old_displacement[global_dof_indices[i]] =</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  saved_old_displacement[cell_id][i];</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  }</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  }</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  }</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  ++cell_id;</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  }</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  _old_displacement.compress(dealii::VectorOperation::insert);</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  }</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span> }</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span> dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host></div>
<div class="line"><a name="l00407"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#a990af88b981649b6abf02c1d935fe137"> 407</a></span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a990af88b981649b6abf02c1d935fe137">MechanicalPhysics<dim, p_order, MaterialStates, MemorySpaceType>::solve</a>()</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> {</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  dealii::IndexSet locally_relevant_dofs =</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  dealii::DoFTools::extract_locally_relevant_dofs(_dof_handler);</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host></div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  displacement(_dof_handler.locally_owned_dofs(), locally_relevant_dofs,</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  _mechanical_operator->rhs().get_mpi_communicator());</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  </div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <span class="comment">// Solve the mechanical problem assuming that the deformation is elastic</span></div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <span class="comment">// TODO check that we are computing only difference of the displacement</span></div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <span class="comment">// compared to the previous time step!!</span></div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> max_iter = _dof_handler.n_dofs() / 10;</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> tol = 1e-12 * _mechanical_operator->rhs().l2_norm();</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  dealii::SolverControl solver_control(max_iter, tol);</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  dealii::SolverCG<</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host>></div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  cg(solver_control);</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="comment">// FIXME Use better preconditioner</span></div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  dealii::TrilinosWrappers::PreconditionSSOR preconditioner;</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  preconditioner.initialize(_mechanical_operator->system_matrix());</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  cg.solve(_mechanical_operator->system_matrix(), displacement,</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  _mechanical_operator->rhs(), preconditioner);</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  _affine_constraints.distribute(displacement);</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  </div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="comment">// Compute the new stress assuming the deformation is elastic.</span></div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="comment">// If the stress is under the yield criterion, the deformation is elastic and</span></div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  <span class="comment">// we are done. Otherwise we need to use the radial return algorithm to</span></div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="comment">// compute the plastic deformation.</span></div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host></div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  incremental_displacement(</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  _dof_handler.locally_owned_dofs(), locally_relevant_dofs,</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  _mechanical_operator->rhs().get_mpi_communicator());</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  incremental_displacement = displacement;</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="keywordflow">if</span> (_old_displacement.size() > 0)</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  {</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  incremental_displacement -= _old_displacement;</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  }</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  incremental_displacement.update_ghost_values();</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  compute_stress(incremental_displacement);</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  </div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  _old_displacement.swap(displacement);</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  </div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keywordflow">return</span> _old_displacement;</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span> }</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  </div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00454"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_physics.html#a460032d48c0384546e4d9c6278bb00c3"> 454</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a460032d48c0384546e4d9c6278bb00c3">MechanicalPhysics<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> <a class="code" href="classadamantine_1_1_mechanical_physics.html#a460032d48c0384546e4d9c6278bb00c3"> compute_stress</a>(</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  &displacement)</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span> {</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  dealii::hp::FEValues<dim> displacement_hp_fe_values(</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  _fe_collection, _q_collection, dealii::update_gradients);</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> dofs_per_cell = _fe_collection.max_dofs_per_cell();</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  std::vector<dealii::types::global_dof_index> local_dof_indices(dofs_per_cell);</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_q_points = _q_collection.max_n_quadrature_points();</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  std::vector<dealii::SymmetricTensor<2, dim>> strain_tensor(n_q_points);</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  <span class="keyword">const</span> dealii::FEValuesExtractors::Vector displacement_extr(0);</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_id = 0;</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler.active_cell_iterators())</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  {</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordflow">if</span> (cell->is_locally_owned() && cell->active_fe_index() == 0)</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  {</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  <span class="comment">// Formulation based on the combined isotropic-kinematic hardening model</span></div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="comment">// for J2 plasticity in Chapter 3 of R. Borja, Plasticity: Modeling and</span></div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="comment">// Computation, Springer-Verlag, 2013. DOI: 10.1007/978-3-642-38547-6</span></div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  <span class="comment">// Compute the strain. We get the strain for all the quadrature points at</span></div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  <span class="comment">// once.</span></div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  displacement_hp_fe_values.reinit(cell);</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  <span class="keyword">auto</span> <span class="keyword">const</span> &fe_values = displacement_hp_fe_values.get_present_fe_values();</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  cell->get_dof_indices(local_dof_indices);</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  </div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  fe_values[displacement_extr].get_function_symmetric_gradients(</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  displacement, strain_tensor);</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  </div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> lambda = _material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0">StateProperty::lame_first_parameter</a>);</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> mu = _material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d">StateProperty::lame_second_parameter</a>);</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">plastic_modulus</a> =</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  _material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">StateProperty::plastic_modulus</a>);</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> iso_hardening_coef =</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  _material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa6cf6ef5f855e222aef5f14bde32876aa">StateProperty::isotropic_hardening</a>);</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  dealii::SymmetricTensor<4, dim> stiffness_tensor =</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  lambda * dealii::outer_product(dealii::unit_symmetric_tensor<dim>(),</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  dealii::unit_symmetric_tensor<dim>()) +</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  2 * mu * dealii::identity_tensor<dim>();</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  <span class="comment">// Loop over the quadrature points.</span></div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> q : fe_values.quadrature_point_indices())</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  {</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  <span class="comment">// Compute the trial elastic stress.</span></div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  dealii::SymmetricTensor<2, dim> elastic_stress = _stress[cell_id][q];</div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  elastic_stress += stiffness_tensor * strain_tensor[q];</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  </div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  <span class="keyword">auto</span> stress_deviator = dealii::deviator(elastic_stress);</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  <span class="keyword">auto</span> effective_stress = stress_deviator - _back_stress[cell_id][q];</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> effective_stress_norm = effective_stress.norm();</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  <span class="keywordflow">if</span> (effective_stress_norm < _plastic_internal_variable[cell_id][q])</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  {</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  <span class="comment">// The deformation is elastic. We just update the stress with the</span></div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="comment">// elastic stress.</span></div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  _stress[cell_id][q] = elastic_stress;</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  }</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  {</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  <span class="comment">// The deformation is plastic. We need to compute a new stress and</span></div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="comment">// update the plastic internal variable and the back stress.</span></div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  <span class="keywordtype">double</span> plastic_strain_increment =</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  (effective_stress_norm - _plastic_internal_variable[cell_id][q]) /</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  (2. * mu + <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">plastic_modulus</a>);</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  <span class="keyword">auto</span> plastic_flow_direction =</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  effective_stress / effective_stress_norm;</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  <span class="comment">// Update stress</span></div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  _stress[cell_id][q] = elastic_stress - 2. * mu *</div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  plastic_strain_increment *</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  plastic_flow_direction;</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <span class="comment">// Update plastic internal variable</span></div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  _plastic_internal_variable[cell_id][q] +=</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  iso_hardening_coef * <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">plastic_modulus</a> * plastic_strain_increment;</div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="comment">// Update back stress</span></div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  _back_stress[cell_id][q] += (1. - iso_hardening_coef) *</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">plastic_modulus</a> * <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">plastic_modulus</a> *</div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  plastic_flow_direction;</div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span>  }</div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  }</div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  }</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span>  ++cell_id;</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  }</div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span> }</div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  </div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span> } <span class="comment">// namespace adamantine</span></div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  </div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span> <a class="code" href="instantiation_8hh.html#a6e27b736fdb336a0f9b0718887969f8b">INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST</a>(<a class="code" href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a>(MechanicalPhysics))</div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span> <a class="code" href="instantiation_8hh.html#a5ce3c88df1424855d7cadaed52c6ec01">INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE</a>(<a class="code" href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a>(MechanicalPhysics))</div>
<div class="ttc" id="a_mechanical_physics_8hh_html"><div class="ttname"><a href="_mechanical_physics_8hh.html">MechanicalPhysics.hh</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_geometry_html"><div class="ttname"><a href="classadamantine_1_1_geometry.html">adamantine::Geometry</a></div><div class="ttdef"><b>Definition:</b> <a href="_geometry_8hh_source.html#l00018">Geometry.hh:19</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_material_property_html"><div class="ttname"><a href="classadamantine_1_1_material_property.html">adamantine::MaterialProperty</a></div><div class="ttdef"><b>Definition:</b> <a href="_material_property_8hh_source.html#l00038">MaterialProperty.hh:39</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html">adamantine::MechanicalOperator</a></div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8hh_source.html#l00031">MechanicalOperator.hh:32</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html">adamantine::MechanicalPhysics</a></div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00022">MechanicalPhysics.hh:23</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a13141333b51a3bf42c61c7b363074191"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a13141333b51a3bf42c61c7b363074191">adamantine::MechanicalPhysics::_q_collection</a></div><div class="ttdeci">dealii::hp::QCollection< dim > _q_collection</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00118">MechanicalPhysics.hh:118</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a34b15e3e7c17411215184e29d7dbc310"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a34b15e3e7c17411215184e29d7dbc310">adamantine::MechanicalPhysics::_fe_collection</a></div><div class="ttdeci">dealii::hp::FECollection< dim > _fe_collection</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00106">MechanicalPhysics.hh:106</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a460032d48c0384546e4d9c6278bb00c3"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a460032d48c0384546e4d9c6278bb00c3">adamantine::MechanicalPhysics::compute_stress</a></div><div class="ttdeci">void compute_stress(dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &displacement)</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8cc_source.html#l00454">MechanicalPhysics.cc:455</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a4d2b92b917d9afb509de50ce5b95a5a1"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a4d2b92b917d9afb509de50ce5b95a5a1">adamantine::MechanicalPhysics::_mechanical_operator</a></div><div class="ttdeci">std::unique_ptr< MechanicalOperator< dim, p_order, MaterialStates, MemorySpaceType > > _mechanical_operator</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00124">MechanicalPhysics.hh:124</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a7d75ded86af05d7dafa270afbfee1760"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a7d75ded86af05d7dafa270afbfee1760">adamantine::MechanicalPhysics::setup_dofs</a></div><div class="ttdeci">void setup_dofs(std::vector< std::shared_ptr< BodyForce< dim >>> const &body_forces=std::vector< std::shared_ptr< BodyForce< dim >>>())</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8cc_source.html#l00097">MechanicalPhysics.cc:98</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a85b7f1c7e2f77d9c020e1b19174b69cb"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a85b7f1c7e2f77d9c020e1b19174b69cb">adamantine::MechanicalPhysics::_back_stress</a></div><div class="ttdeci">std::vector< std::vector< dealii::SymmetricTensor< 2, dim > > > _back_stress</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00149">MechanicalPhysics.hh:149</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_a990af88b981649b6abf02c1d935fe137"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#a990af88b981649b6abf02c1d935fe137">adamantine::MechanicalPhysics::solve</a></div><div class="ttdeci">dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > solve()</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8cc_source.html#l00407">MechanicalPhysics.cc:407</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_aa1013963fdc577e7f3b10a35ef942da5"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#aa1013963fdc577e7f3b10a35ef942da5">adamantine::MechanicalPhysics::_dof_handler</a></div><div class="ttdeci">dealii::DoFHandler< dim > _dof_handler</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00110">MechanicalPhysics.hh:110</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_aa38b3b788fa8c7208a15d12e04c465c3"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#aa38b3b788fa8c7208a15d12e04c465c3">adamantine::MechanicalPhysics::_plastic_internal_variable</a></div><div class="ttdeci">std::vector< std::vector< double > > _plastic_internal_variable</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00139">MechanicalPhysics.hh:139</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_acf3ddacb19d46a0a8c73e7160a757ee3"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#acf3ddacb19d46a0a8c73e7160a757ee3">adamantine::MechanicalPhysics::MechanicalPhysics</a></div><div class="ttdeci">MechanicalPhysics(MPI_Comm const &communicator, unsigned int const fe_degree, Geometry< dim > &geometry, MaterialProperty< dim, p_order, MaterialStates, MemorySpaceType > &material_properties, std::vector< double > const &initial_temperatures)</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8cc_source.html#l00023">MechanicalPhysics.cc:24</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_afdc351b622a883de67c103ad0386c224"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#afdc351b622a883de67c103ad0386c224">adamantine::MechanicalPhysics::_material_properties</a></div><div class="ttdeci">MaterialProperty< dim, p_order, MaterialStates, MemorySpaceType > & _material_properties</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00102">MechanicalPhysics.hh:102</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_physics_html_affafa8024cbf455855f1d1d5e14aeeae"><div class="ttname"><a href="classadamantine_1_1_mechanical_physics.html#affafa8024cbf455855f1d1d5e14aeeae">adamantine::MechanicalPhysics::_stress</a></div><div class="ttdeci">std::vector< std::vector< dealii::SymmetricTensor< 2, dim > > > _stress</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_physics_8hh_source.html#l00144">MechanicalPhysics.hh:144</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html"><div class="ttname"><a href="instantiation_8hh.html">instantiation.hh</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_a5ce3c88df1424855d7cadaed52c6ec01"><div class="ttname"><a href="instantiation_8hh.html#a5ce3c88df1424855d7cadaed52c6ec01">INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE</a></div><div class="ttdeci">#define INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE(TUPLE_0)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00050">instantiation.hh:50</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_a6e27b736fdb336a0f9b0718887969f8b"><div class="ttname"><a href="instantiation_8hh.html#a6e27b736fdb336a0f9b0718887969f8b">INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST</a></div><div class="ttdeci">#define INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST(TUPLE_0)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00040">instantiation.hh:40</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_aea43e135b5e8953669a5702a9e234796"><div class="ttname"><a href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a></div><div class="ttdeci">#define TUPLE(class_name)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00022">instantiation.hh:22</a></div></div>
<div class="ttc" id="anamespaceadamantine_html"><div class="ttname"><a href="namespaceadamantine.html">adamantine</a></div><div class="ttdef"><b>Definition:</b> <a href="_beam_heat_source_properties_8hh_source.html#l00014">BeamHeatSourceProperties.hh:15</a></div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0">adamantine::StateProperty::lame_first_parameter</a></div><div class="ttdeci">@ lame_first_parameter</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d">adamantine::StateProperty::lame_second_parameter</a></div><div class="ttdeci">@ lame_second_parameter</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa6cf6ef5f855e222aef5f14bde32876aa"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa6cf6ef5f855e222aef5f14bde32876aa">adamantine::StateProperty::isotropic_hardening</a></div><div class="ttdeci">@ isotropic_hardening</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa8b1b1873542f77cefc7507bb017bb8d6">adamantine::StateProperty::elastic_limit</a></div><div class="ttdeci">@ elastic_limit</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfac14fc7825d2fee2f752cf74a61cdbe89">adamantine::StateProperty::plastic_modulus</a></div><div class="ttdeci">@ plastic_modulus</div></div>
<div class="ttc" id="anamespacedealii_html"><div class="ttname"><a href="namespacedealii.html">dealii</a></div><div class="ttdef"><b>Definition:</b> <a href="types_8hh_source.html#l00014">types.hh:15</a></div></div>
<div class="ttc" id="astructadamantine_1_1_body_force_html"><div class="ttname"><a href="structadamantine_1_1_body_force.html">adamantine::BodyForce</a></div><div class="ttdef"><b>Definition:</b> <a href="_body_force_8hh_source.html#l00018">BodyForce.hh:19</a></div></div>
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