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<a href="_mechanical_operator_8cc.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* SPDX-FileCopyrightText: Copyright (c) 2022 - 2024, the adamantine authors.</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  </div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include <<a class="code" href="_mechanical_operator_8hh.html">MechanicalOperator.hh</a>></span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include <<a class="code" href="instantiation_8hh.html">instantiation.hh</a>></span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#include <<a class="code" href="utils_8hh.html">utils.hh</a>></span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span>  </div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include <deal.II/base/index_set.h></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include <deal.II/base/symmetric_tensor.h></span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include <deal.II/base/tensor.h></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include <deal.II/differentiation/ad.h></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <deal.II/dofs/dof_tools.h></span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <deal.II/fe/fe_update_flags.h></span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include <deal.II/grid/filtered_iterator.h></span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <deal.II/grid/tria_iterator.h></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include <deal.II/hp/fe_values.h></span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include <deal.II/hp/q_collection.h></span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include <deal.II/lac/affine_constraints.h></span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include <deal.II/lac/full_matrix.h></span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include <deal.II/lac/sparsity_tools.h></span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include <deal.II/physics/elasticity/standard_tensors.h></span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  </div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">namespace </span><a class="code" href="namespaceadamantine.html">adamantine</a></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> {</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a56f0d6c1c3c57ed04ff5b01ae41b47b1"> 28</a></span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a56f0d6c1c3c57ed04ff5b01ae41b47b1">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a56f0d6c1c3c57ed04ff5b01ae41b47b1"> MechanicalOperator</a>(MPI_Comm <span class="keyword">const</span> &communicator,</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <a class="code" href="classadamantine_1_1_material_property.html">MaterialProperty</a><dim, p_order, MaterialStates,</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  MemorySpaceType> &material_properties,</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  std::vector<double> <span class="keyword">const</span> &reference_temperatures)</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  : _communicator(communicator),</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  _reference_temperatures(reference_temperatures),</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  _material_properties(material_properties)</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> {</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> }</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a516d5670ece6305208e11b504ebce1cb"> 41</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a516d5670ece6305208e11b504ebce1cb">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::reinit</a>(</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  dealii::DoFHandler<dim> <span class="keyword">const</span> &dof_handler,</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  dealii::AffineConstraints<double> <span class="keyword">const</span> &affine_constraints,</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  dealii::hp::QCollection<dim> <span class="keyword">const</span> &q_collection,</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  std::vector<std::shared_ptr<<a class="code" href="structadamantine_1_1_body_force.html">BodyForce<dim></a>>> <span class="keyword">const</span> &body_forces)</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> {</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  _dof_handler = &dof_handler;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  _affine_constraints = &affine_constraints;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  _q_collection = &q_collection;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  assemble_system(body_forces);</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> }</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  </div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#acde5a92f9c166d3c5f026eb6d9dbe1bf"> 55</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#acde5a92f9c166d3c5f026eb6d9dbe1bf">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::vmult</a>(</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> &dst,</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  &src)<span class="keyword"> const</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="keyword"></span>{</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  _system_matrix.vmult(dst, src);</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> }</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a571ec4271eb6443fb2ef39c16e503ccf"> 65</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a571ec4271eb6443fb2ef39c16e503ccf">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::Tvmult</a>(</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> &dst,</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  &src)<span class="keyword"> const</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="keyword"></span>{</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  _system_matrix.Tvmult(dst, src);</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> }</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a723ea2e0421887cc80d37be00804ee88"> 75</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a723ea2e0421887cc80d37be00804ee88">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a723ea2e0421887cc80d37be00804ee88"> vmult_add</a>(</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> &dst,</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  &src)<span class="keyword"> const</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="keyword"></span>{</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  _system_matrix.vmult_add(dst, src);</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> }</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  </div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#aa2bd235e12b5876ddfc77d9894c5cf7e"> 86</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#aa2bd235e12b5876ddfc77d9894c5cf7e">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#aa2bd235e12b5876ddfc77d9894c5cf7e"> Tvmult_add</a>(</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> &dst,</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  &src)<span class="keyword"> const</span></div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="keyword"></span>{</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  _system_matrix.Tvmult_add(dst, src);</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> }</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a0cbf2bfcbb9738b0642c99a1b311be9b"> 97</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a0cbf2bfcbb9738b0642c99a1b311be9b">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a0cbf2bfcbb9738b0642c99a1b311be9b"> update_temperature</a>(</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  dealii::DoFHandler<dim> <span class="keyword">const</span> &thermal_dof_handler,</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host> <span class="keyword">const</span></div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  &temperature,</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  std::vector<bool> <span class="keyword">const</span> &has_melted)</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> {</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  _thermal_dof_handler = &thermal_dof_handler;</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  _temperature = temperature;</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  _has_melted = has_melted;</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> }</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> <span class="keyword">template</span> <<span class="keywordtype">int</span> dim, <span class="keywordtype">int</span> p_order, <span class="keyword">typename</span> MaterialStates,</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keyword">typename</span> MemorySpaceType></div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="classadamantine_1_1_mechanical_operator.html#a8e9ae268aa7187dc7d6b61d99a40e82f"> 111</a></span> <span class="keywordtype">void</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a8e9ae268aa7187dc7d6b61d99a40e82f">MechanicalOperator<dim, p_order, MaterialStates, MemorySpaceType>::</a></div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <a class="code" href="classadamantine_1_1_mechanical_operator.html#a8e9ae268aa7187dc7d6b61d99a40e82f"> assemble_system</a>(</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  std::vector<std::shared_ptr<<a class="code" href="structadamantine_1_1_body_force.html">BodyForce<dim></a>>> <span class="keyword">const</span> &body_forces)</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> {</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="comment">// Create the sparsity pattern. Since we use a Trilinos matrix we don't need</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="comment">// the sparsity pattern to outlive the sparse matrix.</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keyword">auto</span> locally_owned_dofs = _dof_handler->locally_owned_dofs();</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="keyword">auto</span> locally_relevant_dofs =</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  dealii::DoFTools::extract_locally_relevant_dofs(*_dof_handler);</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  dealii::DynamicSparsityPattern dsp(locally_relevant_dofs);</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  dealii::DoFTools::make_sparsity_pattern(*_dof_handler, dsp,</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  *_affine_constraints, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  dealii::SparsityTools::distribute_sparsity_pattern(</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  dsp, locally_owned_dofs, _communicator, locally_relevant_dofs);</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  </div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  _system_matrix.reinit(locally_owned_dofs, dsp, _communicator);</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  dealii::hp::FEValues<dim> displacement_hp_fe_values(</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  _dof_handler->get_fe_collection(), *_q_collection,</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  dealii::update_values | dealii::update_gradients |</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  dealii::update_JxW_values);</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  </div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> dofs_per_cell =</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  _dof_handler->get_fe_collection().max_dofs_per_cell();</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  dealii::FullMatrix<double> cell_matrix(dofs_per_cell, dofs_per_cell);</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  std::vector<dealii::types::global_dof_index> local_dof_indices(dofs_per_cell);</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  </div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="comment">// Loop over the locally owned cells that are not FE_Nothing and assemble the</span></div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <span class="comment">// sparse matrix and the right-hand-side</span></div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler->active_cell_iterators() |</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  dealii::IteratorFilters::ActiveFEIndexEqualTo(</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  0, <span class="comment">/* locally owned */</span> <span class="keyword">true</span>))</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  {</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  displacement_hp_fe_values.reinit(cell);</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <span class="keyword">auto</span> <span class="keyword">const</span> &fe_values = displacement_hp_fe_values.get_present_fe_values();</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="keyword">auto</span> <span class="keyword">const</span> &fe = fe_values.get_fe();</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="comment">// Assemble the local martrix</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  cell_matrix = 0;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> lambda = this->_material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0">StateProperty::lame_first_parameter</a>);</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> mu = this->_material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d">StateProperty::lame_second_parameter</a>);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> i : fe_values.dof_indices())</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  {</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="keyword">auto</span> <span class="keyword">const</span> component_i = fe.system_to_component_index(i).first;</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> j : fe_values.dof_indices())</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  {</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <span class="keyword">auto</span> <span class="keyword">const</span> component_j = fe.system_to_component_index(j).first;</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> q_point : fe_values.quadrature_point_indices())</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  {</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  cell_matrix(i, j) +=</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="comment">// FIXME We should be able to use the following formulation but</span></div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="comment">// the result is different. We need to understand why.</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="comment">// ((lambda + mu) * fe_values.shape_grad(i, q_point)[component_i]</span></div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="comment">// * fe_values.shape_grad(j, q_point)[component_j] +</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  ((fe_values.shape_grad(i, q_point)[component_i] *</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  fe_values.shape_grad(j, q_point)[component_j] * lambda) +</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  (fe_values.shape_grad(i, q_point)[component_j] *</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  fe_values.shape_grad(j, q_point)[component_i] * mu) +</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  ((component_i == component_j)</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  ? mu * fe_values.shape_grad(i, q_point) *</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  fe_values.shape_grad(j, q_point)</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  : 0.)) *</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  fe_values.JxW(q_point);</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  }</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  }</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  cell->get_dof_indices(local_dof_indices);</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  _affine_constraints->distribute_local_to_global(</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  cell_matrix, local_dof_indices, _system_matrix);</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  }</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  </div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="comment">// Assemble the rhs</span></div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  dealii::LA::distributed::Vector<double, dealii::MemorySpace::Host></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  assembled_rhs(locally_owned_dofs, locally_relevant_dofs, _communicator);</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  dealii::Vector<double> cell_rhs(dofs_per_cell);</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="comment">// If the list of reference temperatures is non-empty, we solve the</span></div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="comment">// thermo-elastic problem.</span></div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordflow">if</span> (_reference_temperatures.size() > 0)</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  {</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="comment">// Create temperature hp::FEValues using the same finite elements as the</span></div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="comment">// thermal simulation but evaluated at the quadrature points of the</span></div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="comment">// mechanical simulations.</span></div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  dealii::hp::FEValues<dim> temperature_hp_fe_values(</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  _thermal_dof_handler->get_fe_collection(), *_q_collection,</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  dealii::update_values);</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="comment">// _has_melted is using its own indices. The indices are computed using the</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="comment">// locally owned cells of the thermal DoFHandler that have an FE_Index</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="comment">// equal to zero. We need to translate these indices to be used with the</span></div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="comment">// mechanical DoFHandler. This is simplified by the fact that both the</span></div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="comment">// thermal and the mechanical simulation use the same Triangulation and have</span></div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="comment">// the same cells locally owned.</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <span class="keyword">auto</span> &triangulation = _dof_handler->get_triangulation();</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <span class="keyword">const</span> n_local_active_cells = triangulation.n_active_cells();</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  std::vector<unsigned int> cell_indices(n_local_active_cells);</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> cell_index = 0;</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &tria_cell :</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  triangulation.active_cell_iterators() |</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  dealii::IteratorFilters::LocallyOwnedCell())</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  {</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  dealii::TriaIterator<dealii::DoFCellAccessor<dim, dim, false>></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  temperature_cell(&triangulation, tria_cell->level(),</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  tria_cell->index(), _thermal_dof_handler);</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordflow">if</span> (temperature_cell->active_fe_index() == 0)</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  {</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  dealii::TriaIterator<dealii::DoFCellAccessor<dim, dim, false>></div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  displacement_cell(&triangulation, tria_cell->level(),</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  tria_cell->index(), _dof_handler);</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordflow">if</span> (displacement_cell->active_fe_index() == 0)</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  {</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  cell_indices[displacement_cell->active_cell_index()] = cell_index;</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  }</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  ++cell_index;</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  }</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  }</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  _temperature.update_ghost_values();</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  </div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  std::vector<dealii::types::global_dof_index> temperature_local_dof_indices(</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  _thermal_dof_handler->get_fe_collection().max_dofs_per_cell());</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> initial_temperature = _reference_temperatures.back();</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler->active_cell_iterators() |</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  dealii::IteratorFilters::ActiveFEIndexEqualTo(</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  0, <span class="comment">/* locally owned */</span> <span class="keyword">true</span>))</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  {</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  cell_rhs = 0.;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  <span class="comment">// Get the temperature cell associated to the mechanical cell</span></div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  dealii::TriaIterator<dealii::DoFCellAccessor<dim, dim, false>></div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  temperature_cell(&triangulation, cell->level(), cell->index(),</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  _thermal_dof_handler);</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  </div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="comment">// Get the appropriate reference temperature for the cell. If the cell</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="comment">// is not in the unmelted substrate, the reference temperature depends</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="comment">// on the material.</span></div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordtype">double</span> reference_temperature =</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  _has_melted[cell_indices[cell->active_cell_index()]]</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  ? _reference_temperatures[temperature_cell->material_id()]</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  : initial_temperature;</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  </div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  displacement_hp_fe_values.reinit(cell);</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keyword">auto</span> <span class="keyword">const</span> &fe_values = displacement_hp_fe_values.get_present_fe_values();</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  </div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> alpha = this->_material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfaef812195f5d09665316a57069ce3afe6">StateProperty::thermal_expansion_coef</a>);</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> lambda = this->_material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0">StateProperty::lame_first_parameter</a>);</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordtype">double</span> <span class="keyword">const</span> mu = this->_material_properties.get_mechanical_property(</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  cell, <a class="code" href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d">StateProperty::lame_second_parameter</a>);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  </div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  temperature_hp_fe_values.reinit(temperature_cell);</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="keyword">auto</span> &temperature_fe_values =</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  temperature_hp_fe_values.get_present_fe_values();</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  temperature_cell->get_dof_indices(temperature_local_dof_indices);</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  </div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  dealii::FEValuesExtractors::Vector <span class="keyword">const</span> displacements(0);</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> q_point : fe_values.quadrature_point_indices())</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  {</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordtype">double</span> delta_T = -reference_temperature;</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j < temperature_fe_values.dofs_per_cell; ++j)</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  {</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  delta_T += temperature_fe_values.shape_value(j, q_point) *</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  _temperature(temperature_local_dof_indices[j]);</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  }</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keyword">auto</span> B = dealii::Physics::Elasticity::StandardTensors<dim>::I;</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  B *= (3. * lambda + 2 * mu) * alpha * delta_T;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  </div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> i : fe_values.dof_indices())</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  {</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  cell_rhs(i) += dealii::scalar_product(</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  B, fe_values[displacements].gradient(i, q_point)) *</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  fe_values.JxW(q_point);</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  }</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  }</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  </div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  cell->get_dof_indices(local_dof_indices);</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  _affine_constraints->distribute_local_to_global(</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  cell_rhs, local_dof_indices, assembled_rhs);</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  }</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  }</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  </div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="comment">// Add gravitational body force</span></div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <span class="keywordflow">if</span> (body_forces.size())</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  {</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> &cell : _dof_handler->active_cell_iterators() |</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  dealii::IteratorFilters::ActiveFEIndexEqualTo(</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  0, <span class="comment">/* locally owned */</span> <span class="keyword">true</span>))</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  {</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  cell_rhs = 0.;</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  </div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  displacement_hp_fe_values.reinit(cell);</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <span class="keyword">auto</span> <span class="keyword">const</span> &fe_values = displacement_hp_fe_values.get_present_fe_values();</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  </div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  dealii::Tensor<1, dim, double> body_force;</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> &force : body_forces)</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  {</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  body_force += force->eval(cell);</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  }</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  </div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  dealii::FEValuesExtractors::Vector <span class="keyword">const</span> displacements(0);</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  </div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> i : fe_values.dof_indices())</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  {</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span> q_point : fe_values.quadrature_point_indices())</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  cell_rhs(i) += body_force *</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  fe_values[displacements].value(i, q_point) *</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  fe_values.JxW(q_point);</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  }</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  </div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  cell->get_dof_indices(local_dof_indices);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  _affine_constraints->distribute_local_to_global(</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  cell_rhs, local_dof_indices, assembled_rhs);</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  }</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  }</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  </div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  _system_matrix.compress(dealii::VectorOperation::add);</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  assembled_rhs.compress(dealii::VectorOperation::add);</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  </div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">// When solving the system, we don't want ghost entries</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  _system_rhs.reinit(_dof_handler->locally_owned_dofs(), _communicator);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  _system_rhs = assembled_rhs;</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> }</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span> } <span class="comment">// namespace adamantine</span></div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  </div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span> <a class="code" href="instantiation_8hh.html#a6e27b736fdb336a0f9b0718887969f8b">INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST</a>(<a class="code" href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a>(MechanicalOperator))</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <a class="code" href="instantiation_8hh.html#a5ce3c88df1424855d7cadaed52c6ec01">INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE</a>(<a class="code" href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a>(MechanicalOperator))</div>
<div class="ttc" id="a_mechanical_operator_8hh_html"><div class="ttname"><a href="_mechanical_operator_8hh.html">MechanicalOperator.hh</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_material_property_html"><div class="ttname"><a href="classadamantine_1_1_material_property.html">adamantine::MaterialProperty</a></div><div class="ttdef"><b>Definition:</b> <a href="_material_property_8hh_source.html#l00038">MaterialProperty.hh:39</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a0cbf2bfcbb9738b0642c99a1b311be9b"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a0cbf2bfcbb9738b0642c99a1b311be9b">adamantine::MechanicalOperator::update_temperature</a></div><div class="ttdeci">void update_temperature(dealii::DoFHandler< dim > const &thermal_dof_handler, dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &temperature, std::vector< bool > const &has_melted)</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00097">MechanicalOperator.cc:98</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a516d5670ece6305208e11b504ebce1cb"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a516d5670ece6305208e11b504ebce1cb">adamantine::MechanicalOperator::reinit</a></div><div class="ttdeci">void reinit(dealii::DoFHandler< dim > const &dof_handler, dealii::AffineConstraints< double > const &affine_constraints, dealii::hp::QCollection< dim > const &quad, std::vector< std::shared_ptr< BodyForce< dim >>> const &body_forces=std::vector< std::shared_ptr< BodyForce< dim >>>())</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00041">MechanicalOperator.cc:41</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a56f0d6c1c3c57ed04ff5b01ae41b47b1"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a56f0d6c1c3c57ed04ff5b01ae41b47b1">adamantine::MechanicalOperator::MechanicalOperator</a></div><div class="ttdeci">MechanicalOperator(MPI_Comm const &communicator, MaterialProperty< dim, p_order, MaterialStates, MemorySpaceType > &material_properties, std::vector< double > const &reference_temperatures)</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00028">MechanicalOperator.cc:29</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a571ec4271eb6443fb2ef39c16e503ccf"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a571ec4271eb6443fb2ef39c16e503ccf">adamantine::MechanicalOperator::Tvmult</a></div><div class="ttdeci">void Tvmult(dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > &dst, dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &src) const override</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00065">MechanicalOperator.cc:65</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a723ea2e0421887cc80d37be00804ee88"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a723ea2e0421887cc80d37be00804ee88">adamantine::MechanicalOperator::vmult_add</a></div><div class="ttdeci">void vmult_add(dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > &dst, dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &src) const override</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00075">MechanicalOperator.cc:76</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_a8e9ae268aa7187dc7d6b61d99a40e82f"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#a8e9ae268aa7187dc7d6b61d99a40e82f">adamantine::MechanicalOperator::assemble_system</a></div><div class="ttdeci">void assemble_system(std::vector< std::shared_ptr< BodyForce< dim >>> const &body_forces)</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00111">MechanicalOperator.cc:112</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_aa2bd235e12b5876ddfc77d9894c5cf7e"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#aa2bd235e12b5876ddfc77d9894c5cf7e">adamantine::MechanicalOperator::Tvmult_add</a></div><div class="ttdeci">void Tvmult_add(dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > &dst, dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &src) const override</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00086">MechanicalOperator.cc:87</a></div></div>
<div class="ttc" id="aclassadamantine_1_1_mechanical_operator_html_acde5a92f9c166d3c5f026eb6d9dbe1bf"><div class="ttname"><a href="classadamantine_1_1_mechanical_operator.html#acde5a92f9c166d3c5f026eb6d9dbe1bf">adamantine::MechanicalOperator::vmult</a></div><div class="ttdeci">void vmult(dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > &dst, dealii::LA::distributed::Vector< double, dealii::MemorySpace::Host > const &src) const override</div><div class="ttdef"><b>Definition:</b> <a href="_mechanical_operator_8cc_source.html#l00055">MechanicalOperator.cc:55</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html"><div class="ttname"><a href="instantiation_8hh.html">instantiation.hh</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_a5ce3c88df1424855d7cadaed52c6ec01"><div class="ttname"><a href="instantiation_8hh.html#a5ce3c88df1424855d7cadaed52c6ec01">INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE</a></div><div class="ttdeci">#define INSTANTIATE_DIM_PORDER_MATERIALSTATES_DEVICE(TUPLE_0)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00050">instantiation.hh:50</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_a6e27b736fdb336a0f9b0718887969f8b"><div class="ttname"><a href="instantiation_8hh.html#a6e27b736fdb336a0f9b0718887969f8b">INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST</a></div><div class="ttdeci">#define INSTANTIATE_DIM_PORDER_MATERIALSTATES_HOST(TUPLE_0)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00040">instantiation.hh:40</a></div></div>
<div class="ttc" id="ainstantiation_8hh_html_aea43e135b5e8953669a5702a9e234796"><div class="ttname"><a href="instantiation_8hh.html#aea43e135b5e8953669a5702a9e234796">TUPLE</a></div><div class="ttdeci">#define TUPLE(class_name)</div><div class="ttdef"><b>Definition:</b> <a href="instantiation_8hh_source.html#l00022">instantiation.hh:22</a></div></div>
<div class="ttc" id="anamespaceadamantine_html"><div class="ttname"><a href="namespaceadamantine.html">adamantine</a></div><div class="ttdef"><b>Definition:</b> <a href="_beam_heat_source_properties_8hh_source.html#l00014">BeamHeatSourceProperties.hh:15</a></div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa1b84b30e0732e0085b92739b26e604d0">adamantine::StateProperty::lame_first_parameter</a></div><div class="ttdeci">@ lame_first_parameter</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfa36e25e5dc72b563a77e3564cfa40692d">adamantine::StateProperty::lame_second_parameter</a></div><div class="ttdeci">@ lame_second_parameter</div></div>
<div class="ttc" id="anamespaceadamantine_html_aa5027312f0c48c4d12d5db86607b9ecfaef812195f5d09665316a57069ce3afe6"><div class="ttname"><a href="namespaceadamantine.html#aa5027312f0c48c4d12d5db86607b9ecfaef812195f5d09665316a57069ce3afe6">adamantine::StateProperty::thermal_expansion_coef</a></div><div class="ttdeci">@ thermal_expansion_coef</div></div>
<div class="ttc" id="astructadamantine_1_1_body_force_html"><div class="ttname"><a href="structadamantine_1_1_body_force.html">adamantine::BodyForce</a></div><div class="ttdef"><b>Definition:</b> <a href="_body_force_8hh_source.html#l00018">BodyForce.hh:19</a></div></div>
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