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Hi all,
It is very helpful using CMplot to plot SNP effect, using script as follows,
CMplot(cattle50K, type="h",plot.type="m", band=0.5, LOG10=FALSE, ylab="SNP effect",ylim=c(-0.02,0.02), threshold.lty=2, threshold.lwd=1, threshold.col="red", amplify=FALSE,cex=0.6, chr.den.col=NULL, file="jpg",file.name="",dpi=300,file.output=TRUE,verbose=TRUE)
It will be great if anyone know how to change the script to display snp effect >0 as blue, while <0 as red.
Best, Junfeng
The text was updated successfully, but these errors were encountered:
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Hi all,
It is very helpful using CMplot to plot SNP effect, using script as follows,
CMplot(cattle50K, type="h",plot.type="m", band=0.5, LOG10=FALSE, ylab="SNP effect",ylim=c(-0.02,0.02), threshold.lty=2, threshold.lwd=1, threshold.col="red", amplify=FALSE,cex=0.6, chr.den.col=NULL, file="jpg",file.name="",dpi=300,file.output=TRUE,verbose=TRUE)It will be great if anyone know how to change the script to display snp effect >0 as blue, while <0 as red.
Best,
Junfeng
The text was updated successfully, but these errors were encountered: