You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Can you please help me understanding the error thrown by CMplot?
There is my code:
data2<-read.table('newdata_1-6', head=TRUE)
data2<-data2[order(data2[,2]),]
library(CMplot)
CMplot(data2,plot.type="c",
r=0.4,col=c("grey30","grey60"),
chr.labels=paste("Chr",c(1:6),sep=""),
threshold=c(1e-6,1e-4),cir.chr.h=1.5,
amplify=TRUE,threshold.lty=c(1,2),
threshold.col=c("red","blue"),signal.line=1,
signal.col=c("red","green"),
chr.den.col=c("darkgreen","yellow","red"),
bin.size=1e6,outward=FALSE,file="pdf",
dpi=300,file.output=TRUE,verbose=TRUE)
My data have the '0' values and I wonder if Manhattan can't be mapped with a p-value of zero.
The text was updated successfully, but these errors were encountered:
I also try to use the other data which without a p-value of zero and i 've got the plot.How can I use data with a value of 0 to draw a circular Manhattan plot?
Can you please help me understanding the error thrown by CMplot?
There is my code:
data2<-read.table('newdata_1-6', head=TRUE)
data2<-data2[order(data2[,2]),]
library(CMplot)
CMplot(data2,plot.type="c",
r=0.4,col=c("grey30","grey60"),
chr.labels=paste("Chr",c(1:6),sep=""),
threshold=c(1e-6,1e-4),cir.chr.h=1.5,
amplify=TRUE,threshold.lty=c(1,2),
threshold.col=c("red","blue"),signal.line=1,
signal.col=c("red","green"),
chr.den.col=c("darkgreen","yellow","red"),
bin.size=1e6,outward=FALSE,file="pdf",
dpi=300,file.output=TRUE,verbose=TRUE)
My data have the '0' values and I wonder if Manhattan can't be mapped with a p-value of zero.
The text was updated successfully, but these errors were encountered: