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Add a retry count of 3 for prefetch
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rnaseq_pipeline/sources/sra.py

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@@ -47,6 +47,8 @@ class PrefetchSraRun(luigi.Task):
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"""
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srr = luigi.Parameter(description='SRA run identifier')
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retry_count = 3
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@staticmethod
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def _get_ncbi_public_dir():
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ret = subprocess.run(['vdb-config', '-p'], stdout=subprocess.PIPE, universal_newlines=True)

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