bugfixes and tweaks

MurrellGroup · Feb 20, 2025 · 56ecd18 · 56ecd18
1 parent 31947b4
commit 56ecd18
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Showing 4 changed files with 2 additions and 5 deletions.
diff --git a/src/ProteinChains.jl b/src/ProteinChains.jl
@@ -1,6 +1,5 @@
 module ProteinChains
 
-
 using Reexport
 @reexport using Backboner
 

diff --git a/src/ideal.jl b/src/ideal.jl
@@ -106,5 +106,3 @@ function prepend_residue(backbone::Backbone, torsion_angles::Vector{<:Real}; ide
     bond_angles = [ideal.N_Ca_C_angle, ideal.Ca_C_N_angle, ideal.C_N_Ca_angle]
     return prepend_bonds(backbone, Float64.(bond_lengths), Float64.(bond_angles), Float64.(torsion_angles))
 end
-
-function idealize! end
diff --git a/src/io/io.jl b/src/io/io.jl
@@ -1,4 +1,4 @@
-using BioStructures: BioStructures, MMCIFDict, PDBFormat, MMCIFFormat
+using BioStructures: BioStructures, MMCIFDict, PDBFormat, MMCIFFormat, downloadpdb
 
 const ProteinFileFormat = Union{PDBFormat, MMCIFFormat}
 const AMINOACIDS = Set("ACDEFGHIKLMNPQRSTVWY")

diff --git a/src/io/read.jl b/src/io/read.jl
@@ -26,7 +26,7 @@ end
 function ProteinChain(chain::BioStructures.Chain)
     residues = BioStructures.collectresidues(chain, backbone_residue_selector)
     proteinchain = if isempty(residues)
-        ProteinChain(BioStructures.chainid(chain), Vector{Atom{Float64}}[], "", "", Int[])
+        ProteinChain(BioStructures.chainid(chain), Vector{Atom{Float64}}[], "", Int[], "")
     else
         id = BioStructures.chainid(chain)
         atoms = get_atoms(Atom{Float64}, residues)