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.doc/conf.py

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# Settings for GitHub actions integration
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if on_rtd:
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extensions.append("rtds_action")
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rtds_action_github_repo = "MODFLOW-USGS/modflow6-examples"
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rtds_action_github_repo = "MODFLOW-ORG/modflow6-examples"
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rtds_action_path = "."
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rtds_action_artifact_prefix = "rtd-files-for-"
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rtds_action_github_token = os.environ.get("GITHUB_TOKEN", None)
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<div class="admonition note">
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This page was generated from
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<a class="reference external" href="https://github.com/MODFLOW-USGS/modflow6-examples/blob/"""
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<a class="reference external" href="https://github.com/MODFLOW-ORG/modflow6-examples/blob/"""
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+ ref
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+ r"""/scripts/{{ env.docname.split('/')|last|e + '.py' }}">{{ env.docname.split('/')|last|e + '.py' }}</a>.
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It's also available as a <a href="{{ env.docname.split('/')|last|e + '.ipynb' }}" class="reference download internal" download>notebook</a>.

.doc/index.rst

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11
MODFLOW 6 Examples
22
======================================================
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This site demonstrates MODFLOW 6 by constructing, running, post-processing and visualizing example scenarios with `FloPy <https://flopy.readthedocs.io>`_. Documentation is generated with Sphinx from the `MODFLOW 6 examples repository <https://github.com/MODFLOW-USGS/modflow6-examples>`_.
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This site demonstrates MODFLOW 6 by constructing, running, post-processing and visualizing example scenarios with `FloPy <https://flopy.readthedocs.io>`_. Documentation is generated with Sphinx from the `MODFLOW 6 examples repository <https://github.com/MODFLOW-ORG/modflow6-examples>`_.
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For each example, this site includes a detailed description containing background information, explication of the modeling scenario, and any relevant citations, as well as a notebook containing the example's Python source code.
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.github/workflows/ex-rtd.yml

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- name: Checkout MODFLOW 6
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uses: actions/checkout@v4
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with:
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repository: MODFLOW-USGS/modflow6
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repository: MODFLOW-ORG/modflow6
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path: modflow6
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ref: ${{ needs.set_options.outputs.mf6_ref }}
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- build
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runs-on: ubuntu-latest
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if: |
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github.repository_owner == 'MODFLOW-USGS' &&
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github.repository_owner == 'MODFLOW-ORG' &&
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(
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github.ref_name == 'master' ||
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github.ref_name == 'develop'

.github/workflows/ex-workflow.yml

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- name: Checkout MODFLOW 6
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uses: actions/checkout@v4
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with:
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repository: MODFLOW-USGS/modflow6
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repository: MODFLOW-ORG/modflow6
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path: modflow6
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- name: Setup Python
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- name: Checkout MODFLOW 6
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uses: actions/checkout@v4
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with:
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repository: MODFLOW-USGS/modflow6
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repository: MODFLOW-ORG/modflow6
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path: modflow6
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- name: Checkout usgslatex
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uses: actions/checkout@v4
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with:
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repository: MODFLOW-USGS/usgslatex
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repository: MODFLOW-ORG/usgslatex
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path: usgslatex
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- name: Install LaTeX and extra fonts
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- name: Delete latest release
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if: |
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github.repository_owner == 'MODFLOW-USGS' &&
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github.repository_owner == 'MODFLOW-ORG' &&
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github.ref_name == 'master' &&
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github.event_name == 'push'
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env:
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- name: Create new release
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if: |
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github.repository_owner == 'MODFLOW-USGS' &&
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github.repository_owner == 'MODFLOW-ORG' &&
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github.ref_name == 'master' &&
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github.event_name == 'push'
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uses: ncipollo/release-action@v1
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- name: Upload release assets
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if: |
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github.repository_owner == 'MODFLOW-USGS' &&
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github.repository_owner == 'MODFLOW-ORG' &&
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github.ref_name == 'master' &&
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github.event_name == 'push'
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uses: svenstaro/upload-release-action@v2

DEVELOPER.md

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### Update FloPy classes
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FloPy and MODFLOW 6 versions must be kept in sync for FloPy to properly generate and consume MF6 input/output files. To update FloPy from some branch of the [MODFLOW 6 repository](https://github.com/MODFLOW-USGS/modflow6), for instance the `develop` branch:
71+
FloPy and MODFLOW 6 versions must be kept in sync for FloPy to properly generate and consume MF6 input/output files. To update FloPy from some branch of the [MODFLOW 6 repository](https://github.com/MODFLOW-ORG/modflow6), for instance the `develop` branch:
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```shell
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python -m flopy.mf6.utils.generate_classes --ref develop --no-backup
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```python
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fpath = pooch.retrieve(
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url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:<MD5 hash of the file>",

README.md

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11
# MODFLOW 6 Examples
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[![CI](https://github.com/MODFLOW-USGS/modflow6-examples/actions/workflows/ex-workflow.yml/badge.svg)](https://github.com/MODFLOW-USGS/modflow6-examples/actions/workflows/ex-workflow.yml)
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[![CI](https://github.com/MODFLOW-ORG/modflow6-examples/actions/workflows/ex-workflow.yml/badge.svg)](https://github.com/MODFLOW-ORG/modflow6-examples/actions/workflows/ex-workflow.yml)
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[![Documentation Status](https://readthedocs.org/projects/modflow6-examples/badge/?version=latest)](https://modflow6-examples.readthedocs.io/en/latest/?badge=latest)
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This repository contains MODFLOW 6 examples.
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## Release contents
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When changes reach the `master` branch, this repository's contents are [rebuilt and posted as a new release](https://github.com/MODFLOW-USGS/modflow6-examples/releases) with the following assets:
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When changes reach the `master` branch, this repository's contents are [rebuilt and posted as a new release](https://github.com/MODFLOW-ORG/modflow6-examples/releases) with the following assets:
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* PDF containing a description of the example scenarios
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* archive containing input files for the example models
@@ -26,10 +26,10 @@ When changes reach the `master` branch, this repository's contents are [rebuilt
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## Resources
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* [U.S. Geological Survey MODFLOW 6 Page](https://www.usgs.gov/software/modflow-6-usgs-modular-hydrologic-model)
29-
* [MODFLOW 6 binary executables for Windows, Mac, and Linux](https://github.com/MODFLOW-USGS/modflow6-nightly-build/releases)
30-
* [MODFLOW 6 Repository](https://github.com/MODFLOW-USGS/modflow6)
31-
* [Binary executables for MODFLOW and other related programs that may be required to run these examples](https://github.com/MODFLOW-USGS/executables)
29+
* [MODFLOW 6 binary executables for Windows, Mac, and Linux](https://github.com/MODFLOW-ORG/modflow6-nightly-build/releases)
30+
* [MODFLOW 6 Repository](https://github.com/MODFLOW-ORG/modflow6)
31+
* [Binary executables for MODFLOW and other related programs that may be required to run these examples](https://github.com/MODFLOW-ORG/executables)
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3333
## Issues
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35-
Any issues with the MODFLOW 6 examples should be posted on the main [MODFLOW 6 GitHub repo](https://github.com/MODFLOW-USGS/modflow6) and flagged with the [examples](https://github.com/MODFLOW-USGS/modflow6/labels/examples) label.
35+
Any issues with the MODFLOW 6 examples should be posted on the main [MODFLOW 6 GitHub repo](https://github.com/MODFLOW-ORG/modflow6) and flagged with the [examples](https://github.com/MODFLOW-ORG/modflow6/labels/examples) label.

etc/requirements.usgs.txt

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git+https://github.com/modflowpy/flopy.git@develop
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git+https://github.com/MODFLOW-USGS/modflowapi.git@develop
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git+https://github.com/MODFLOW-USGS/modflow-devtools.git@develop
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git+https://github.com/MODFLOW-ORG/modflowapi.git@develop
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git+https://github.com/MODFLOW-ORG/modflow-devtools.git@develop

scripts/ex-gwe-ates.py

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# Load a file stored in the data directory for building out the DISV grid
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fname = "disv_nodes.fem"
231231
fpath = pooch.retrieve(
232-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:d107d2a5e01646a861e73bb3465f0747",

scripts/ex-gwe-geotherm.py

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# Instantiating MODFLOW 6 discretization package
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fname = "Mesh.dat"
476476
fpath = pooch.retrieve(
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url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:f3d321b7690f9f1f7dcd730c2bfe8e23",
@@ -859,7 +859,7 @@ def plot_temperature(sim, scen, time_):
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# aX_pth = os.path.join('..', 'data', 'ex-gwe-geotherm')
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fname = "spectral_Qin=100_t=50d-X.csv"
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aX_pth = pooch.retrieve(
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url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:c6f08403c9863da315393ad9bf3f0f33",
@@ -868,7 +868,7 @@ def plot_temperature(sim, scen, time_):
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869869
fname = "spectral_Qin=100_t=50d-Y.csv"
870870
aY_pth = pooch.retrieve(
871-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
871+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:8901f084096a8868b4d25393162fc780",
@@ -877,7 +877,7 @@ def plot_temperature(sim, scen, time_):
877877

878878
fname = "spectral_Qin=100_t=50d-Z.csv"
879879
aZ_pth = pooch.retrieve(
880-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
880+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:c011c72c7e8af10e6bd2fcc5fb069884",

scripts/ex-gwe-radial.py

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# Load a file stored in the data directory for building out the DISV grid
103103
fname = "Qin100_V1e-5.csv"
104104
fpath = pooch.retrieve(
105-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
105+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/develop/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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scripts/ex-gwf-advtidal.py

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ghb_spd = {0: ghb_spd}
177177
fname = "tides.csv"
178178
fname = pooch.retrieve(
179-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:425337a0bf24fa72c9e40f4e3d9f698a",
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218218
]
219219
fname = "wellrates.csv"
220220
fpath = pooch.retrieve(
221-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
221+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:6ca7366be279d679b14e8338a195422f",
@@ -252,7 +252,7 @@ def build_models():
252252
riv_spd = list(zip(rivlay, rivrow, rivcol, rivstg, rivcnd, rivrbt, rivbnd))
253253
fname = "riverstage.csv"
254254
fpath = pooch.retrieve(
255-
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255+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:83f8b526ec6e6978b1d9dbd6fde231ef",
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290290
)
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fname = f"recharge{ipak + 1}.csv"
292292
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293+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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scripts/ex-gwf-bcf2ss.py

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# Load the wetdry array for layer 1
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:3a4b357b7d2cd5175a205f3347ab973d",

scripts/ex-gwf-bump.py

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# Load the bottom
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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scripts/ex-gwf-capture.py

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# Load the bottom, hydraulic conductivity, and idomain arrays
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fname = "bottom.txt"
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fpath = pooch.retrieve(
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64+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:201758a5b7febb0390b8b52e634be27f",
6868
)
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bottom = np.loadtxt(fpath)
7070
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7171
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72-
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72+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
7373
fname=fname,
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path=data_path,
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7676
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7878
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7979
fpath = pooch.retrieve(
80-
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80+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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scripts/ex-gwf-csub-p01.py

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8787
# Load the aquifer load time series
8888
fname = "train_load_193704231304.csv"
8989
fpath = pooch.retrieve(
90-
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90+
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9191
fname=fname,
9292
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known_hash="md5:32dc8e7b7e39876374af43605e264725",
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311311
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312312
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313313
fpath = pooch.retrieve(
314-
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314+
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315315
fname=fname,
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known_hash="md5:1098bcd3f4fc1bd3b38d3d55152a8fbb",

scripts/ex-gwf-csub-p03.py

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# Load the constant time series
5454
fname = "boundary_heads.csv"
5555
fpath = pooch.retrieve(
56-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
56+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:8177e15feeeedcdd59ee15745e796e59",
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722722
def get_obs_dataframe(file_name, hash):
723723
fpath = pooch.retrieve(
724-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{file_name}",
724+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{file_name}",
725725
fname=file_name,
726726
path=data_path,
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known_hash=f"md5:{hash}",
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11611161
fname = "boundary_heads.csv"
11621162
fpath = pooch.retrieve(
1163-
url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
1163+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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scripts/ex-gwf-csub-p04.py

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# Load active domain and create idomain array
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fname = "idomain.txt"
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fpath = pooch.retrieve(
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url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
101+
url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:2f05a27b6f71e564c0d3616e3fd00ac8",

scripts/ex-gwf-disvmesh.py

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@@ -116,7 +116,7 @@ def from_argus_export(fname):
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# Load argus mesh and get disv grid properties
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fname = "argus.exp"
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fpath = pooch.retrieve(
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url=f"https://github.com/MODFLOW-USGS/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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url=f"https://github.com/MODFLOW-ORG/modflow6-examples/raw/master/data/{sim_name}/{fname}",
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fname=fname,
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path=data_path,
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known_hash="md5:072a758ca3d35831acb7e1e27e7b8524",

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