Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error: Database was built with an older version of Diamond and is incompatible. #60

Open
ly-318 opened this issue Feb 13, 2025 · 2 comments

Comments

@ly-318
Copy link

ly-318 commented Feb 13, 2025

(phabox2) emma@emma-X570S-AORUS-MASTER:/media/emma/HD1/LY$ phabox2 --task phagcn --contigs /media/emma/HD1/LY/example_contigs.fa --outpth /media/emma/HD1/LY/test --dbd
ir /media/emma/HD1/LY/phabox_db_v2/
PhaBOX2 is running with: 32 threads!
Running program: PhaGCN (taxonomy classification)
[1/8] filtering the length of contigs...
[2/8] calling genes with prodigal...
[3/8] running all-against-all alignment...
Command 'diamond blastp --db /media/emma/HD1/LY/phabox_db_v2//RefVirus.dmnd --query /media/emma/HD1/LY/test/midfolder//query_protein.fa --out /media/emma/HD1/LY/test/midfolder//db_results.tab --outfmt 6 --threads 32 --evalue 1e-5 --max-target-seqs 10000 --query-cover 50 --subject-cover 50 --quiet' failed with exit code 1
Error: Database was built with an older version of Diamond and is incompatible.

please run the command manually to check the error

@KennthShang
Copy link
Owner

Hi @ly-318 ,

This should be a problem caused by your diamond version. please ensure it is diamond=0.9.14.

Best,
Jiayu

@ly-318
Copy link
Author

ly-318 commented Feb 13, 2025

It works. Thank you so much!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants