- Fix bug when adding missing variances (PR 36)
- Fix bug in detecting high ratio of variances (issue 35)
- Added
test_dsep(.)
to calculate a p-value for the probability that a a data set arose from the specified model (highly experimental) - Added
total_effect(.)
to calculate total effects - Fixed bug where dsem crashed when
quiet = FALSE
and running without data e.g., as qualitative network model - Added vignette showing how to approximate diffusive movement using DSEM with paths among adjacent strata
- Edits to allow DSEM to run when all path coefficients are fixed (contributed by Maurice Goodman)
- Adding option for lower and upper bounds
- Adding
stepwise_selection
for automated stepwise model selection - Adding
plot
option to useggraph
as alternative to previousigraph
option - Adding
convert_equations
to extendsem::specifyEquations
and simplify specification for large models - Adding argument
prior_negloglike
as interface to specify Bayesian priors and/or likelihood penalties indsem
- Adding
dsemRTMB
using RTMB as interchangeable alternative todsem
using TMB
- Adding option to specify constant marginal variance, as alternative to existing calculation which results in a constant conditional variance but a changing marginal variance along the causal graph
- removing
checkDepPackageVersion(dep_pkg="Matrix", this_pkg="TMB")
from.onLoad()
as requested by K. Kristensen
- Adding option to specify covariance via argument
covs
- Adding options to specify gmrf_parameterization="projection"
- Adding vigette outlining how to fit dynamic factor analysis
- Fix bug arising when
tsdata
had two or more columns sharing a single variable name - Adding
make_dfa
helper function - Updating bering_sea dataset to include extra year of cold-pool, and changing vignette to match the published specification and results
- Updating the lag indexing for the Klein-I model in the vignette to use positive values for lags, and updating saved MCMC results to match that corrected specification
- Adding option to specify covariance in Gamma
- Eliminate
eval
usage - Add codecov Action and badge
- Change default behavior so that all variables in
tsdata
have a standard deviation by default
- Fix bug in
simulate.dsem
to keep up with changing interface indsem
- Update CITATION to indicate accepted paper
- Remove fit_tmb to eliminate cryptic warning messages and simplify code
- Initial public release