From 91fcce64d8fe2ac6a0cf6e8d5ce4b1e746eb2fc9 Mon Sep 17 00:00:00 2001
From: tpeulen <thomas.peulen@posteo.de>
Date: Fri, 24 Jan 2025 21:36:44 +0100
Subject: [PATCH] Remove unused enviroment files

---
 env_osx.yml     |  42 ------
 env_win.yml     | 341 ------------------------------------------------
 environment.yml |  39 ------
 3 files changed, 422 deletions(-)
 delete mode 100644 env_osx.yml
 delete mode 100644 env_win.yml
 delete mode 100644 environment.yml

diff --git a/env_osx.yml b/env_osx.yml
deleted file mode 100644
index ed411d9f..00000000
--- a/env_osx.yml
+++ /dev/null
@@ -1,42 +0,0 @@
-name: chisurf
-
-channels:
-  - conda-forge
-  - tpeulen
-  - defaults
-
-dependencies:
-  - python =3.10
-  - numpy <=1.23
-  - pyyaml
-  - pyqtgraph
-  - matplotlib
-  - deprecation
-  - scikit-fluorescence
-  - typing_extensions 4.2.*
-  - typing-extensions 4.2
-  - typing_utils 0.1.*
-  - scipy 1.11.*
-  - numba 0.57.*
-  - notebook
-  - tttrlib
-  - imp
-  - mdtraj
-  - pdb2pqr 3.6.1
-  - propka
-  - ipython 7.*.*
-  - chinet >=0.0.8
-  - labellib
-  - pyopencl 2023.*
-  - pytools 2023.*
-  - emcee 3.1.*
-  - pyopengl 3.1.*
-  - pymol-open-source 2.5.*
-  - tttrconvert
-  - qscintilla2
-  - k2dist
-  - python-docx 1.0.*
-  - qtconsole 5.*
-  - ndxplorer
-  - clsmview
-  - pyqtwebengine
diff --git a/env_win.yml b/env_win.yml
deleted file mode 100644
index fc6ffe2d..00000000
--- a/env_win.yml
+++ /dev/null
@@ -1,341 +0,0 @@
-name: chisurf
-channels:
-  - defaults
-  - conda-forge
-  - tpeulen
-dependencies:
-  - _ipython_minor_entry_point=8.7.0=hb6b4a82_0
-  - anyio=3.7.1=pyhd8ed1ab_0
-  - aom=3.5.0=h63175ca_0
-  - appdirs=1.4.4=pyh9f0ad1d_0
-  - asttokens=2.4.1=pyhd8ed1ab_0
-  - astunparse=1.6.3=py_0
-  - attrs=23.1.0=pyh71513ae_1
-  - backcall=0.2.0=pyhd3eb1b0_0
-  - beautifulsoup4=4.12.2=pyha770c72_0
-  - blas=1.0=mkl
-  - blosc=1.21.5=hdccc3a2_0
-  - boa=0.15.1=pyhd8ed1ab_0
-  - boltons=23.0.0=pyhd8ed1ab_0
-  - boost-cpp=1.78.0=h9f4b32c_4
-  - bottleneck=1.3.7=py310h3e78b6c_1
-  - brotli=1.0.9=h2bbff1b_7
-  - brotli-bin=1.0.9=h2bbff1b_7
-  - brotli-python=1.0.9=py310h00ffb61_8
-  - bzip2=1.0.8=he774522_0
-  - c-blosc2=2.10.5=h183a6f4_0
-  - ca-certificates=2024.8.30=h56e8100_0
-  - cached-property=1.5.2=py_0
-  - cairo=1.16.0=haedb8bc_5
-  - certifi=2024.8.30=pyhd8ed1ab_0
-  - cffi=1.16.0=py310h8d17308_0
-  - cfitsio=3.470=h2bbff1b_7
-  - chardet=5.2.0=py310h5588dad_1
-  - charls=2.2.0=h6c2663c_0
-  - charset-normalizer=2.0.4=pyhd3eb1b0_0
-  - chinet=0.0.8=py310h3b1134b_0
-  - click=8.1.7=win_pyh7428d3b_0
-  - click-didyoumean=0.3.0=pyhd8ed1ab_0
-  - clsmview=24.04.30=py310hf5e371a_0
-  - colorama=0.4.6=pyhd8ed1ab_0
-  - comm=0.1.4=pyhd8ed1ab_0
-  - commonmark=0.9.1=py_0
-  - conda=23.3.1=py310h5588dad_0
-  - conda-build=3.25.0=py310h5588dad_0
-  - conda-index=0.2.3=pyhd8ed1ab_0
-  - conda-package-handling=2.2.0=pyh38be061_0
-  - conda-package-streaming=0.9.0=pyhd8ed1ab_0
-  - contourpy=1.2.0=py310h232114e_0
-  - cryptography=41.0.5=py310h6e82f81_0
-  - curl=8.1.2=h68f0423_0
-  - cycler=0.11.0=pyhd3eb1b0_0
-  - cyrus-sasl=2.1.27=hf835e1f_7
-  - cython=3.0.5=py310h00ffb61_0
-  - dataclasses=0.8=pyhc8e2a94_3
-  - dav1d=1.2.1=h2bbff1b_0
-  - debugpy=1.8.0=py310h00ffb61_1
-  - decorator=5.1.1=pyhd3eb1b0_0
-  - deprecation=2.1.0=pyhd3eb1b0_0
-  - emcee=3.0.2=pyh5ca1d4c_0
-  - exceptiongroup=1.1.3=pyhd8ed1ab_0
-  - executing=2.0.1=pyhd8ed1ab_0
-  - expat=2.5.0=hd77b12b_0
-  - ffmpeg=5.1.2=gpl_h5b1d025_107
-  - fftw=3.3.10=nompi_h38027f0_108
-  - filelock=3.13.1=pyhd8ed1ab_0
-  - fit2x=0.0.9=py310h3b1134b_0
-  - fmt=9.1.0=h181d51b_0
-  - font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
-  - font-ttf-inconsolata=2.001=hcb22688_0
-  - font-ttf-source-code-pro=2.030=hd3eb1b0_0
-  - font-ttf-ubuntu=0.83=h8b1ccd4_0
-  - fontconfig=2.14.2=hbde0cde_0
-  - fonts-anaconda=1=h8fa9717_0
-  - fonts-conda-ecosystem=1=hd3eb1b0_0
-  - fonttools=4.25.0=pyhd3eb1b0_0
-  - freeglut=3.2.2=h63175ca_2
-  - freetype=2.12.1=ha860e81_0
-  - future=0.18.3=pyhd8ed1ab_0
-  - gettext=0.21.1=h5728263_0
-  - giflib=5.2.1=h8cc25b3_3
-  - git=2.42.0=h57928b3_0
-  - glew=2.1.0=hd77b12b_3
-  - glib=2.78.0=h12be248_0
-  - glib-tools=2.78.0=h12be248_0
-  - glm=0.9.9.8=h181d51b_0
-  - glob2=0.7=py_0
-  - graphite2=1.3.14=hd77b12b_1
-  - gsl=2.7=hdfb1a43_0
-  - gst-plugins-base=1.22.6=h001b923_2
-  - gstreamer=1.22.6=hb4038d2_2
-  - guidata=3.1.0=pyhd8ed1ab_0
-  - guiqwt=4.4.5=py310hc58c231_0
-  - h5py=3.8.0=nompi_py310hae7a582_100
-  - harfbuzz=6.0.0=he256f1b_0
-  - hdf4=4.2.15=h1b1b6ef_5
-  - hdf5=1.12.2=nompi_h57737ce_101
-  - htmd-pdb2pqr=0.0.2=pyh9f0ad1d_1
-  - icc_rt=2022.1.0=h6049295_2
-  - icu=70.1=h0e60522_0
-  - idna=3.4=pyhd8ed1ab_0
-  - ihm=0.41=py310h8d17308_0
-  - imagecodecs=2023.1.23=py310h6c6a46e_0
-  - imageio=2.31.5=pyh8c1a49c_0
-  - imp=2.18.0=py310hd756669_1
-  - importlib-metadata=6.8.0=pyha770c72_0
-  - importlib_metadata=6.8.0=hd8ed1ab_0
-  - importlib_resources=6.1.1=pyhd8ed1ab_0
-  - intel-openmp=2023.1.0=h59b6b97_46319
-  - ipykernel=6.26.0=pyha63f2e9_0
-  - ipython=8.7.0=pyh08f2357_0
-  - ipython_genutils=0.2.0=pyhd3eb1b0_1
-  - jasper=2.0.33=hc2e4405_1
-  - jedi=0.19.1=pyhd8ed1ab_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - joblib=1.3.2=pyhd8ed1ab_0
-  - jpeg=9e=h2bbff1b_1
-  - json5=0.9.14=pyhd8ed1ab_0
-  - jsonpatch=1.33=pyhd8ed1ab_0
-  - jsonpointer=2.4=py310h5588dad_3
-  - jsonschema=4.19.2=pyhd8ed1ab_0
-  - jsonschema-specifications=2023.7.1=pyhd8ed1ab_0
-  - jupyter_client=8.6.0=pyhd8ed1ab_0
-  - jupyter_core=5.5.0=py310h5588dad_0
-  - notebook
-  - k2dist=24.02.16=py310h3bcd3f7_0
-  - khronos-opencl-icd-loader=2023.04.17=h64bf75a_0
-  - kiwisolver=1.4.5=py310h232114e_1
-  - krb5=1.20.1=heb0366b_0
-  - labellib=2020.10.05=py310h1c4a608_0
-  - lazy_loader=0.3=pyhd8ed1ab_0
-  - lcms2=2.12=h83e58a3_0
-  - lerc=3.0=hd77b12b_0
-  - libaec=1.1.2=h63175ca_1
-  - libarchive=3.6.2=h27c7867_0
-  - libavif=0.11.1=ha7b97ba_2
-  - libblas=3.9.0=1_h8933c1f_netlib
-  - libbrotlicommon=1.0.9=h2bbff1b_7
-  - libbrotlidec=1.0.9=h2bbff1b_7
-  - libbrotlienc=1.0.9=h2bbff1b_7
-  - libbson=1.23.2=h63175ca_0
-  - libcblas=3.9.0=5_hd5c7e75_netlib
-  - libclang=15.0.7=default_h77d9078_3
-  - libclang13=15.0.7=default_h77d9078_3
-  - libcurl=8.1.2=h68f0423_0
-  - libdb=6.2.32=h6c2663c_1
-  - libdeflate=1.17=h2bbff1b_1
-  - libffi=3.4.4=hd77b12b_0
-  - libglib=2.78.0=he8f3873_0
-  - libiconv=1.17=h8ffe710_0
-  - liblapack=3.9.0=5_hd5c7e75_netlib
-  - liblapacke=3.9.0=5_hd5c7e75_netlib
-  - liblief=0.12.3=h63175ca_0
-  - libmamba=1.4.2=h8a7d157_0
-  - libmambapy=1.4.2=py310h3fe4c2e_0
-  - libmongoc=1.23.2=h56f0553_0
-  - libnetcdf=4.9.1=nompi_hc41bf00_101
-  - libogg=1.3.5=h2bbff1b_1
-  - libopencv=4.7.0=py310h90026ac_1
-  - libopus=1.3.1=h8ffe710_1
-  - libpng=1.6.39=h8cc25b3_0
-  - libprotobuf=3.21.12=h12be248_2
-  - librttr=0.9.6=boost1.78.0h21fdd89_1
-  - libsodium=1.0.18=h62dcd97_0
-  - libsolv=0.7.25=h12be248_0
-  - libsqlite=3.44.0=hcfcfb64_0
-  - libssh2=1.11.0=h7dfc565_0
-  - libtiff=4.5.1=hd77b12b_0
-  - libvorbis=1.3.7=he774522_0
-  - libwebp=1.3.2=hbc33d0d_0
-  - libwebp-base=1.3.2=h2bbff1b_0
-  - libxml2=2.10.4=hc3477c8_0
-  - libxslt=1.1.37=h0192164_0
-  - libzip=1.10.1=h1d365fa_3
-  - libzlib=1.2.13=hcfcfb64_5
-  - libzopfli=1.0.3=ha925a31_0
-  - llvmlite=0.40.1=py310hb84602e_0
-  - lxml=4.9.2=py310hc0e5b84_0
-  - lz4-c=1.9.4=h2bbff1b_0
-  - lzo=2.10=he774522_1000
-  - m2-msys2-runtime=2.5.0.17080.65c939c=3
-  - m2-patch=2.7.5=2
-  - m2w64-gcc-libgfortran=5.3.0=6
-  - m2w64-gcc-libs=5.3.0=7
-  - m2w64-gcc-libs-core=5.3.0=7
-  - m2w64-gmp=6.1.0=2
-  - m2w64-libwinpthread-git=5.0.0.4634.697f757=2
-  - mako=1.2.4=pyhd8ed1ab_0
-  - mamba=1.4.2=py310hd9d798f_0
-  - markupsafe=2.1.3=py310h8d17308_1
-  - matplotlib=3.8.2=py310h5588dad_0
-  - matplotlib-base=3.8.2=py310hc9baf74_0
-  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
-  - mdtraj=1.9.9=py310h63e6b18_1
-  - menuinst=1.4.20=py310h00ffb61_0
-  - mkl=2023.1.0=h6b88ed4_46357
-  - mkl-service=2.4.0=py310h2bbff1b_1
-  - mkl_fft=1.3.8=py310h2bbff1b_0
-  - mkl_random=1.2.4=py310h59b6b97_0
-  - more-itertools=10.1.0=pyhd8ed1ab_0
-  - mpfr=4.2.1=h64bf75a_0
-  - mpi=1.0=msmpi
-  - mpir=3.0.0=he025d50_1002
-  - mrcfile=1.4.3=pyhd8ed1ab_0
-  - msgpack-python=1.0.6=py310h232114e_0
-  - msmpi=10.1.1=h3502643_7
-  - msys2-conda-epoch=20160418=1
-  - munkres=1.1.4=py_0
-  - ndxplorer=0.0.1=py31hbbfc1a7_0
-  - nest-asyncio=1.5.8=pyhd8ed1ab_0
-  - networkx=3.2.1=pyhd8ed1ab_0
-  - numba=0.57.1=py310h19bcfe9_0
-  - numexpr=2.7.3=py310hf5e1058_2
-  - numpy=1.23.5=py310h85e1a82_1
-  - numpy-base=1.23.5=py310hb5c95e7_1
-  - opencv=4.7.0=py310h5588dad_1
-  - openh264=2.3.1=h63175ca_2
-  - openjpeg=2.4.0=h4fc8c34_0
-  - openssl=3.3.2=h2466b09_0
-  - packaging=23.2=pyhd8ed1ab_0
-  - pandas=2.1.3=py310hecd3228_0
-  - parso=0.8.3=pyhd8ed1ab_0
-  - pathlib2=2.3.7.post1=py310h5588dad_3
-  - pcre2=10.40=h17e33f8_0
-  - pickleshare=0.7.5=pyhd3eb1b0_1003
-  - pillow=10.0.1=py310h045eedc_0
-  - pip=23.3.1=pyhd8ed1ab_0
-  - pixman=0.40.0=h2bbff1b_1
-  - pkginfo=1.9.6=pyhd8ed1ab_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
-  - platformdirs=3.5.1=pyhd8ed1ab_0
-  - pluggy=1.3.0=pyhd8ed1ab_0
-  - ply=3.11=py_1
-  - pmw=2.0.1=py310h5588dad_1008
-  - pooch=1.8.0=pyhd8ed1ab_0
-  - progressbar2=4.2.0=pyhd8ed1ab_0
-  - prompt-toolkit=3.0.41=pyha770c72_0
-  - prompt_toolkit=3.0.41=hd8ed1ab_0
-  - propka=3.1.0=py_0
-  - protobuf=4.21.12=py310h00ffb61_0
-  - psutil=5.9.5=py310h8d17308_1
-  - pure_eval=0.2.2=pyhd8ed1ab_0
-  - py-cpuinfo=9.0.0=pyhd8ed1ab_0
-  - py-lief=0.12.3=py310h00ffb61_0
-  - py-opencv=4.7.0=py310hbbfc1a7_1
-  - pybind11-abi=4=hd8ed1ab_3
-  - pycosat=0.6.6=py310h8d17308_0
-  - pycparser=2.21=pyhd3eb1b0_0
-  - pygments=2.17.1=pyhd8ed1ab_0
-  - pymol-open-source=2.5.0=py310hd14ea85_6
-  - pyopencl=2023.1.4=py310h9e621fd_0
-  - pyopengl=3.1.6=pyhd8ed1ab_1
-  - pyopenssl=23.3.0=pyhd8ed1ab_0
-  - pyparsing=3.1.1=pyhd8ed1ab_0
-  - pyqt=5.15.9=py310h1fd54f2_5
-  - pyqt5-sip=12.12.2=py310h00ffb61_5
-  - pyqtgraph=0.13.7=pyhd8ed1ab_0
-  - pyqtwebengine=5.15.9=py310he49db7d_5
-  - pysocks=1.7.1=pyh0701188_6
-  - pytables=3.7.0=py310haee3a42_3
-  - python=3.10.13=h4de0772_0_cpython
-  - python-dateutil=2.8.2=pyhd3eb1b0_0
-  - python-docx=1.1.0=pyhd8ed1ab_0
-  - python-libarchive-c=5.0=py310h5588dad_2
-  - python-slugify=5.0.2=pyhd3eb1b0_0
-  - python-tzdata=2023.3=pyhd3eb1b0_0
-  - python-utils=3.8.1=pyhd8ed1ab_0
-  - python_abi=3.10=4_cp310
-  - pythonqwt=0.11.1=pyh9208f05_0
-  - pytools=2023.1.1=pyhd8ed1ab_0
-  - pytz=2023.3.post1=pyhd8ed1ab_0
-  - pywavelets=1.4.1=py310h3e78b6c_1
-  - pywin32=306=py310h00ffb61_2
-  - pyyaml=6.0.1=py310h8d17308_1
-  - pyzmq=25.1.1=py310hcd737a0_1
-  - qscintilla2=2.14.1=py310he49db7d_0
-  - qt-main=5.15.8=h720456b_6
-  - qt-webengine=5.15.8=h5b1ea0b_0
-  - qtconsole=5.2.2=pyhd8ed1ab_1
-  - qtconsole-base=5.2.2=pyhd8ed1ab_1
-  - qtpy=1.11.3=pyhd8ed1ab_0
-  - referencing=0.30.2=pyhd8ed1ab_0
-  - reproc=14.2.4.post0=hcfcfb64_1
-  - reproc-cpp=14.2.4.post0=h63175ca_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - rich=12.4.1=pyhd8ed1ab_0
-  - ripgrep=13.0.0=h7f3b576_3
-  - rmf=1.4.1=py310hd250433_0
-  - rpds-py=0.13.1=py310h87d50f1_0
-  - ruamel.yaml=0.17.40=py310h8d17308_0
-  - ruamel.yaml.clib=0.2.7=py310h8d17308_2
-  - ruamel_yaml=0.15.80=py310h8d17308_1009
-  - schwimmbad=0.3.2=py310h5588dad_4
-  - scikit-fluorescence=0.0.6=py310hbbfc1a7_0
-  - scikit-image=0.22.0=py310hecd3228_2
-  - scipy=1.11.3=py310hf667824_1
-  - setuptools=68.2.2=pyhd8ed1ab_0
-  - sip=6.7.12=py310h00ffb61_0
-  - six=1.16.0=pyhd3eb1b0_1
-  - snappy=1.1.10=hfb803bf_0
-  - sniffio=1.3.0=pyhd8ed1ab_0
-  - soupsieve=2.5=pyhd8ed1ab_1
-  - sqlite=3.41.2=h2bbff1b_0
-  - stack_data=0.6.2=pyhd8ed1ab_0
-  - svt-av1=1.4.1=h63175ca_0
-  - tbb=2021.8.0=h59b6b97_0
-  - text-unidecode=1.3=pyhd3eb1b0_0
-  - tifffile=2023.8.12=pyhd8ed1ab_0
-  - tk=8.6.13=hcfcfb64_0
-  - toml=0.10.2=pyhd8ed1ab_0
-  - tomli=2.0.1=pyhd8ed1ab_0
-  - toolz=0.12.0=pyhd8ed1ab_0
-  - tornado=6.3.3=py310h8d17308_1
-  - tqdm=4.66.1=pyhd8ed1ab_0
-  - traitlets=5.13.0=pyhd8ed1ab_0
-  - tttrconvert=0.0.1=py310hbbfc1a7_0
-  - tttrlib=0.24.3=py310hffd586d_1
-  - typing-extensions=4.5.0=hd8ed1ab_0
-  - typing_extensions=4.5.0=pyha770c72_0
-  - tzdata=2023c=h71feb2d_0
-  - ucrt=10.0.20348.0=haa95532_0
-  - unidecode=1.2.0=pyhd3eb1b0_0
-  - urllib3=2.1.0=pyhd8ed1ab_0
-  - vc=14.2=h21ff451_1
-  - vc14_runtime=14.36.32532=hdcecf7f_17
-  - vs2015_runtime=14.36.32532=h05e6639_17
-  - watchgod=0.8.2=pyhd8ed1ab_0
-  - wcwidth=0.2.5=pyhd3eb1b0_0
-  - wheel=0.41.3=pyhd8ed1ab_0
-  - win_inet_pton=1.1.0=pyhd8ed1ab_6
-  - x264=1!164.3095=h8ffe710_2
-  - x265=3.5=h2d74725_3
-  - xz=5.4.2=h8cc25b3_0
-  - yaml=0.2.5=he774522_0
-  - yaml-cpp=0.7.0=h63175ca_3
-  - zeromq=4.3.4=hd77b12b_0
-  - zfp=1.0.0=hd77b12b_0
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zlib=1.2.13=hcfcfb64_5
-  - zlib-ng=2.0.7=hcfcfb64_0
-  - zstandard=0.22.0=py310h0009e47_0
-  - zstd=1.5.5=hd43e919_0
diff --git a/environment.yml b/environment.yml
deleted file mode 100644
index a3800e24..00000000
--- a/environment.yml
+++ /dev/null
@@ -1,39 +0,0 @@
-name: chisurf
-
-channels:
-  - conda-forge
-  - tpeulen
-  - defaults
-
-dependencies:
-  - python =3.10
-  - numpy
-  - pyyaml
-  - pyqtgraph
-  - matplotlib
-  - deprecation
-  - scikit-fluorescence
-  - typing_extensions 4.5.*
-  - typing_utils 0.1.*
-  - scipy 1.11.*
-  - numba 0.57.*
-  - tttrlib
-  - mdtraj
-  - pdb2pqr 3.2.*
-  - propka 3.4.*
-  - ipython 7.*.*
-  - chinet >=0.0.8
-  - notebook
-  - labellib
-  - pyopencl 2023.*
-  - pytools 2023.*
-  - emcee 3.1.*
-  - pyopengl 3.1.*
-  - pymol-open-source 2.5.*
-  - tttrconvert
-  - qscintilla2
-  - k2dist
-  - python-docx 1.0.*
-  - qtconsole 5.*
-  - ndxplorer
-  - clsmview