From a4dc43d7557df41f95f8f5963642b53f5cded99e Mon Sep 17 00:00:00 2001 From: Leah Kemp Date: Tue, 13 Oct 2020 10:06:35 +1300 Subject: [PATCH] Make gatk conda env compatible with parabricks gatk version As it stands, this causes an error at gatk_GenotypeGVCFs for cohort runs --- workflow/envs/gatk4.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/envs/gatk4.yaml b/workflow/envs/gatk4.yaml index d13bace..7cac917 100644 --- a/workflow/envs/gatk4.yaml +++ b/workflow/envs/gatk4.yaml @@ -3,4 +3,4 @@ channels: - conda-forge - defaults dependencies: - - bioconda::gatk4 =4.1.8.1 \ No newline at end of file + - bioconda::gatk4 =4.1.0.0