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NEWS.md

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BRSpred Version 1.2.1 2024-08-13

  • Corrections to erasmus_clinical (data provided with the package)

BRSpred Version 1.2.0 2023-05-12

  • Addition of raw aligned count data matrices for Cohorts A and B (Data S2 in paper)

BRSpred Version 1.1.2 2023-03-15

  • Compression of data/-folder contents (.RData)
  • Minor adjustments to 'BRS prediction' vignette

BRSpred Version 1.1.1 2023-03-14

  • Clarifications and reformatting in the 'BRS prediction' vignette

BRSpred Version 1.1.0 2023-02-15

  • BRS main function revised
  • Replaced dot '.' with underscore '_' in all data objects
  • Added post-BCG data for cohort A
  • Instead of providing a pre-fit pamr, the pamr object is fit in BRS function on the fly as per pipeline
  • Fixes to R CMD check NOTEs (LazyDataCompression etc)

BRSpred Version 1.0.5 2022-08-24

  • Minor revisions

BRSpred Version 1.0.4 2022-08-09

  • Reordering of clinical data, with Grade and Substage earlier

BRSpred Version 1.0.3 2022-04-03

  • Sup Table 5 (immune cell estimates) added to the package
  • Revised imports

BRSpred Version 1.0.2 2022-04-03

  • Grade and substage added to clinical data

BRSpred Version 1.0.1 2021-11-24

  • Minor tidying up, mention of build_vignettes and Rtools

BRSpred Version 1.0.0 2021-11-11

  • First version of BRSpred