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neuro_analysis.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="Remy's Neuroimaging Analysis Scripts.">
<title>Neuroimaging Analysis Scripts | Remy Cohan</title>
<link href="https://fonts.googleapis.com/css2?family=Poppins:wght@400;600&display=swap" rel="stylesheet">
<style>
body {
font-family: 'Poppins', sans-serif;
margin: 0;
padding: 0;
line-height: 1.7;
color: #333;
background: linear-gradient(135deg, #f7f9fc, #dfe6e9);
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color: white;
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font-size: 2.5rem;
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justify-content: center;
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width: 250px;
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margin-left: 20px;
text-decoration: none;
display: block;
margin-bottom: 20px;
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flex-direction: column;
align-items: center;
padding: 0;
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nav a {
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position: static;
width: 100%;
height: auto;
box-shadow: none;
display: flex;
justify-content: center;
flex-wrap: wrap;
margin-bottom: 20px;
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.sidebar h3 {
width: 100%;
text-align: center;
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main {
margin-left: 0;
padding: 20px;
}
header {
font-size: 2rem;
padding: 1rem 0;
}
}
</style>
</head>
<body>
<!-- Header -->
<header>Remy Cohan</header>
<!-- Navigation -->
<nav>
<a href="index.html">Home</a>
<a href="Projects.html">Current Projects</a>
<a href="nifti_viewer.html">Interactive MRI Viewer</a>
<a href="simulations_ml.html">Simulation and ML</a>
<a href="plots.html">Statistics & Plotting</a>
<a href="posters.html">Conference Posters</a>
</nav>
<!-- Sidebar Trigger -->
<div class="sidebar-tab" onclick="toggleSidebar()">☰</div>
<!-- Sidebar -->
<aside class="sidebar">
<h3>Quick Links</h3>
<a href="https://github.com/CohanR/EEG_SourceLoc">EEG Source Localisation</a>
<a href="https://github.com/CohanR/14_channel_EEG_Data">EEG Data Processing with MNE</a>
<a href="https://github.com/CohanR/Enigma_Voxel_based_morphometry">MRI Voxel-Based Morphometry</a>
<a href="https://github.com/CohanR/BrainVolume_Calculation">Brain Volume Analysis</a>
<a href="https://github.com/CohanR/HeadMesh_MRI">Creating Head Mesh from T1 MRI</a>
</aside>
<!-- Main Content -->
<main>
<section>
<h2>EEG Source Localisation</h2>
<!-- Display the GIF -->
<div style="text-align:center;">
<img src="images/EEG_SourceLoc_Remy_Cohan.gif" alt="EEG Source Localisation Example" style="max-width:100%; height:auto; border:2px solid #ccc; border-radius:8px;">
</div>
<!-- Add description -->
<p style="text-align:justify; font-size:1rem;">
EEG Source Localisation pipeline and the workflow for preprocessing, epoching, co-registration, and source reconstruction using EEG data.
</p>
<!-- Add link to the GitHub repository -->
<p style="text-align:center;">
<a href="https://github.com/CohanR/EEG_SourceLoc" target="_blank" style="color:#2E86C1; text-decoration:none; font-weight:600;">
View the GitHub Repository
</a>
</p>
<section>
<h2>Voxel-Based Morphometry with Enigma Toolbox</h2>
<img src="images/ENigma_VBM_L_hippocampus_Remy.png" alt="ENIGMA STROKE VBM" style="max-width:100%; height:auto;">
<p>Checkout the Voxel-Based Morphometry with Enigma Toolbox Code on GitHub:</p>
<a href="https://github.com/CohanR/Enigma_Voxel_based_morphometry" target="_blank">View the GitHub Repository</a>
</section>
<section>
<h2>Brain Volume Analysis and Visualisation</h2>
<img src="images/BrainVol_grey_matter_vis_RC.png" alt="Brain Volume Analysis" style="max-width:100%; height:auto;">
<img src="images/BrainVol_result_output.png" alt="Brain Volume Analysis output" style="max-width:100%; height:auto;">
<p>Checkout the Brain Volume analysis on T1w images on GitHub:</p>
<a href="https://github.com/CohanR/BrainVolume_Calculation" target="_blank">View the GitHub Repository</a>
</section>
</section>
<h1>Neuroimaging Data Processing & Analysis Scripts</h1>
<p>Below are some of my neuroimaging data processing & analysis scripts:</p>
<!-- Sections for Neuroimaging Scripts -->
<section>
<h2>EEG Data Processing with MNE</h2>
<img src="images/output3.png" alt="Hodgkin Huxley Simulation GIF" style="max-width:100%; height:auto;">
<p>Checkout the EEG Data Processing with MNE toolbox Code on GitHub:</p>
<a href="https://github.com/CohanR/14_channel_EEG_Data" target="_blank">View the GitHub Repository</a>
</section>
</main>
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