DESCRIPTION

Package: exFINDER
Type: Package
Title: exFINDER: identify external communication signals using single-cell transcriptomics data (Title Case)
Version: 1.0.0
Author: person("Changhan", "He", , "changhanhe@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-1349-0075"))
Maintainer: The package maintainer <changhanhe@gmail.com>
Description: exFINDER identifies external signals received by the cells in the single-cell transcriptomics datasets by utilizing the prior knowledge of signaling pathways. In particular, exFINDER can uncover external signals that activate the given target genes, infer the external signal-target signaling network (exSigNet), and perform quantitative analysis on exSigNets. 
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.0.0)
LazyData: true
LazyDataCompression: xz
Imports:
    clusterProfiler,
    igraph,
    pheatmap,
    stringr,
    org.Mm.eg.db,
    org.Hs.eg.db,
    org.Dr.eg.db,
    stats,
    Seurat,
    forcats,
    ggraph,
    RColorBrewer,
    qpdf,
    magrittr,
    factoextra,
    cluster,
    ggfortify,
    BioTIP,
    GenomicRanges,
    Hmisc,
    MASS,
    dplyr,
    ggplot2,
    patchwork,
    psych,
    CellChat,
    base,
    extrafont
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr