diff --git a/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibited-by-molecule.rq b/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibited-by-molecule.rq index 65149710..f6a7cd9b 100644 --- a/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibited-by-molecule.rq +++ b/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibited-by-molecule.rq @@ -1,12 +1,11 @@ PREFIX rdfs: -PREFIX obo: PREFIX bibo: PREFIX sio: PREFIX bao: PREFIX rdf: PREFIX mmdbvoc: PREFIX repr: -PREFIX cito: +PREFIX dcterms: SELECT DISTINCT ?inhibitorInChIKey ?uniprot_trembl_id ?hgcn_id ?source_doi ?source_pmid @@ -16,11 +15,12 @@ VALUES ?inhibitorInChIKey { $inhibitor_list } sio:SIO_000300 ?inhibitorInChIKey]. ?transporterAssay rdf:type bao:BAO_0000040 ; bao:BAO_0090012 ?inhibitor; - bao:BAO_0000426 [cito:citesAsDataSource ?ref]; + bao:BAO_0000426 [dcterms:references ?ref] ; bao:BAO_0090012 [rdf:type bao:BAO_0000283; - obo:ERO_0000547 ?uniprot_trembl_id; - rdfs:label ?hgcn_id]; + sio:SIO_000008 [ sio:SIO_000300 ?uniprot_trembl_id]; + rdfs:label ?hgcn_id; + ]; bao:BAO_0000208 [rdf:type mmdbvoc:InhibitionAssay; - bao:BAO_0095007 repr:PositiveResult]. + sio:SIO_000300 repr:PositiveResult]. ?ref bibo:pmid ?source_pmid } \ No newline at end of file diff --git a/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibitors.rq b/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibitors.rq index e8bf05b1..77742c03 100644 --- a/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibitors.rq +++ b/src/pyBiodatafuse/annotators/queries/molmedb-transporters-inhibitors.rq @@ -5,23 +5,23 @@ PREFIX bao: PREFIX rdf: PREFIX mmdbvoc: PREFIX repr: -PREFIX cito: +PREFIX dcterms: SELECT DISTINCT ?transporterID ?label ?InChIKey ?SMILES ?chembl_id ?chebi_id ?drugbank_id ?pubchem_compound_id ?molmedb_id ?source_doi ?source_pmid WHERE { -VALUES ?transporterID { $transporter_list } - BIND(IRI(CONCAT("http://purl.uniprot.org/uniprot/", ?transporterID)) AS ?transporterIDurl) + VALUES ?transporterID { $transporter_list } - ?transporterIDurl rdf:type bao:BAO_0000283 . + ?transporter rdf:type bao:BAO_0000283 ; + sio:SIO_000008 [ sio:SIO_000300 ?transporterID ] . ?transporterAssay rdf:type bao:BAO_0000040 ; - bao:BAO_0090012 ?transporterIDurl; - bao:BAO_0000426 [cito:citesAsDataSource ?ref]; - bao:BAO_0090012 ?inhibitor; + bao:BAO_0090012 ?transporter ; + bao:BAO_0000426 [dcterms:references ?ref] ; + bao:BAO_0090012 ?inhibitor ; bao:BAO_0000208 [rdf:type mmdbvoc:InhibitionAssay; - bao:BAO_0095007 repr:PositiveResult]. + sio:SIO_000300 repr:PositiveResult]. ?inhibitor rdf:type bao:BAO_0000076; rdfs:label ?label; sio:SIO_000008 [rdf:type sio:CHEMINF_000059;