Preparing 0.1.0

Author: AdamMiltonBarker

Android/__int__.py

@@ -1,14 +1,15 @@
-
 ############################################################################################
 #
-# Project:       Peter Moss Acute Myeloid/Lymphoblastic Leukemia AI Research Project
-# Repository:    AML/ALL Detection System
+# Project:       Peter Moss Acute Myeloid & Lymphoblastic Leukemia AI Research Project
+# Repository:    ALL Detection System 2019
+# Project:       Data Augmentation
 #
 # Author:        Adam Milton-Barker (AdamMiltonBarker.com)
-# Title:         Manual Augmentation Class
-# Description:   Manual augmentation class for the AML/ALL Detection System.
+# Contributors:
+# Title:         Manual Data Augmentation Class
+# Description:   Manual data augmentation class for the ALL Detection System 2019.
 # License:       MIT License
-# Last Modified: 2019-05-09
+# Last Modified: 2020-07-14
 #
 ############################################################################################
 
@@ -21,14 +22,14 @@
 plt.rcParams['image.cmap'] = 'gray'
 
 
-class ManualAugmentation():
-    """ AML/ALL Detection System Manual Augmentation Class
+class Augmentation():
+    """ ALL Detection System 2019 Manual Data Augmentation Class
 
-    Manual augmentation class for the AML/ALL Detection System.
+    Manual data augmentation wrapper class for the ALL Detection System 2019 Data Augmentation project.
     """
 
     def __init__(self):
-        """ Initializes the AML/ALL Detection System Manual Augmentation Class. """
+        """ Initializes the Augmentation class. """
 
         self.Data = Data()
 
@@ -47,7 +48,7 @@ def processDataset(self):
 
 print("!! Data Augmentation Program Starting !!")
 print("")
-ManualAugmentation = ManualAugmentation()
-ManualAugmentation.processDataset()
+Augmentation = Augmentation()
+Augmentation.processDataset()
 print(" Data Augmentation Program Complete")
 print("")

Augmentation/V1/Augmentation.ipynb Augmentation/Augmentation.ipynb

@@ -1,19 +1,18 @@
 ############################################################################################
 #
-# Project:       Peter Moss Acute Myeloid/Lymphoblastic Leukemia AI Research Project
-# Repository:    AML/ALL Detection System
-# Project:       AML/ALL Detection System
+# Project:       Peter Moss Acute Myeloid & Lymphoblastic Leukemia AI Research Project
+# Repository:    ALL Detection System 2019
+# Project:       Data Augmentation
 #
 # Author:        Adam Milton-Barker (AdamMiltonBarker.com)
 # Contributors:
-# Title:         Augmentation Data Helpers Class
-# Description:   Helper functions for data augmentation used with the
-#                AML/ALL Detection System.
+# Title:         Data Class
+# Description:   Data augmentation class for the ALL Detection System 2019.
 # License:       MIT License
 # Credit:        Based on methods outline in the Leukemia Blood Cell Image
 #                Classification Using Convolutional Neural Network paper:
 #                http://www.ijcte.org/vol10/1198-H0012.pdf
-# Last Modified: 2019-05-09
+# Last Modified: 2020-07-14
 #
 ############################################################################################
 
@@ -25,20 +24,21 @@
 import numpy as np
 import matplotlib.pyplot as plt
 
+from numpy.random import seed
 from scipy import ndimage
 from PIL import Image
 
 from Classes.Helpers import Helpers
 
 
 class Data():
-    """ AML/ALL Detection System Data Helpers Class
+    """ ALL Detection System 2019 Data Class
 
-    Data augmentation functions.
+    Data augmentation class for the ALL Detection System 2019 Data Augmentation project.
     """
 
     def __init__(self):
-        """ Initializes the AML/ALL Detection System Data Helpers Class. """
+        """ Initializes the Data class. """
 
         self.Helpers = Helpers()
         self.confs = self.Helpers.loadConfs()
@@ -48,6 +48,9 @@ def __init__(self):
         self.filesMade = 0
         self.trainingDir = self.confs["Settings"]["TrainDir"]
 
+        self.seed = self.confs["Settings"]["Seed"]
+        seed(self.seed)
+
     def writeImage(self, filename, image):
         """ Writes an image to provided file path. """
 
@@ -174,6 +177,8 @@ def rotation(self, path, filePath, filename, show=False):
         cols, rows, chs = image.shape
 
         for i in range(0, 20):
+            # Seed needs to be set each time randint is called
+            random.seed(self.seed)
             randDeg = random.randint(-180, 180)
             matrix = cv2.getRotationMatrix2D((cols/2, rows/2), randDeg, 0.70)
             rotated = cv2.warpAffine(image, matrix, (rows, cols), borderMode=cv2.BORDER_CONSTANT,

Augmentation/V1/Manual.py Augmentation/Augmentation.py

@@ -1,15 +1,15 @@
 ############################################################################################
 #
-# Project:       Peter Moss Acute Myeloid/Lymphoblastic Leukemia AI Research Project
-# Repository:    AML/ALL Detection System
-# Project:       AML/ALL Detection System
+# Project:       Peter Moss Acute Myeloid & Lymphoblastic Leukemia AI Research Project
+# Repository:    ALL Detection System 2019
+# Project:       Data Augmentation
 #
 # Author:        Adam Milton-Barker (AdamMiltonBarker.com)
 # Contributors:
-# Title:         Data Augmentation Helper Class
-# Description:   Helper functions for the AML/ALL Detection System Augmentation Class.
+# Title:         Helper Class
+# Description:   Helper class for the ALL Detection System 2019.
 # License:       MIT License
-# Last Modified: 2019-05-09
+# Last Modified: 2020-07-14
 #
 ############################################################################################
 
@@ -20,18 +20,18 @@
 
 
 class Helpers():
-    """ AML/ALL Detection System Movidius NCS1 Classifier Helper Class
+    """ ALL Detection System 2019 Helper Class
 
-    Common helper functions for the AML/ALL Detection System Movidius NCS1 Classifier. 
+    Common helper functions for the ALL Detection System 2019 Data Augmentation project. 
     """
 
     def __init__(self):
-        """ Initializes the AML/ALL Detection System Helper Class. """
+        """ Initializes the Helper class. """
 
         pass
 
     def loadConfs(self):
-        """ Loads the AML/ALL Detection System configuration. """
+        """ Loads the configuration. """
 
         confs = {}
         with open('Required/confs.json') as confs: